Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0859

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0857 and DvMF_0858 are separated by 499 nucleotidesDvMF_0858 and DvMF_0859 overlap by 4 nucleotidesDvMF_0859 and DvMF_0860 are separated by 190 nucleotides DvMF_0857: DvMF_0857 - Cupin 2 conserved barrel domain protein (RefSeq), at 1,034,493 to 1,034,810 _0857 DvMF_0858: DvMF_0858 - hypothetical protein (RefSeq), at 1,035,310 to 1,035,669 _0858 DvMF_0859: DvMF_0859 - protein of unknown function DUF340 membrane (RefSeq), at 1,035,666 to 1,036,271 _0859 DvMF_0860: DvMF_0860 - extracellular solute-binding protein family 3 (RefSeq), at 1,036,462 to 1,037,202 _0860 Position (kb) 1035 1036 1037Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1034.677 kb on - strand, within DvMF_0857at 1034.779 kb on - strandat 1036.023 kb on - strand, within DvMF_0859at 1036.430 kb on + strandat 1036.451 kb on - strandat 1036.766 kb on + strand, within DvMF_0860at 1036.784 kb on + strand, within DvMF_0860at 1037.124 kb on - strand, within DvMF_0860at 1037.236 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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1,034,677 - DvMF_0857 0.58 -0.7
1,034,779 - -0.8
1,036,023 - DvMF_0859 0.59 -2.1
1,036,430 + -1.3
1,036,451 - +1.1
1,036,766 + DvMF_0860 0.41 -0.2
1,036,784 + DvMF_0860 0.43 -1.5
1,037,124 - DvMF_0860 0.89 -0.2
1,037,236 - -4.6

Or see this region's nucleotide sequence