Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0811

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0810 and DvMF_0811 are separated by 383 nucleotidesDvMF_0811 and DvMF_0812 overlap by 4 nucleotides DvMF_0810: DvMF_0810 - major intrinsic protein (RefSeq), at 977,066 to 977,824 _0810 DvMF_0811: DvMF_0811 - FAD dependent oxidoreductase (RefSeq), at 978,208 to 979,836 _0811 DvMF_0812: DvMF_0812 - transcriptional regulator, DeoR family (RefSeq), at 979,833 to 980,795 _0812 Position (kb) 978 979 980Strain fitness (log2 ratio) -3 -2 -1 0 1at 977.255 kb on + strand, within DvMF_0810at 977.272 kb on + strand, within DvMF_0810at 977.421 kb on - strand, within DvMF_0810at 977.556 kb on + strand, within DvMF_0810at 978.008 kb on - strandat 978.173 kb on + strandat 979.245 kb on + strand, within DvMF_0811at 979.829 kb on - strandat 979.886 kb on - strandat 979.984 kb on - strand, within DvMF_0812at 980.099 kb on - strand, within DvMF_0812at 980.170 kb on - strand, within DvMF_0812at 980.187 kb on + strand, within DvMF_0812at 980.222 kb on + strand, within DvMF_0812at 980.384 kb on + strand, within DvMF_0812at 980.570 kb on + strand, within DvMF_0812at 980.753 kb on + strandat 980.761 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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977,255 + DvMF_0810 0.25 -0.5
977,272 + DvMF_0810 0.27 -0.3
977,421 - DvMF_0810 0.47 -0.9
977,556 + DvMF_0810 0.65 +0.8
978,008 - -0.5
978,173 + -1.3
979,245 + DvMF_0811 0.64 -2.1
979,829 - -1.2
979,886 - -1.2
979,984 - DvMF_0812 0.16 +0.4
980,099 - DvMF_0812 0.28 -0.2
980,170 - DvMF_0812 0.35 -1.2
980,187 + DvMF_0812 0.37 -3.7
980,222 + DvMF_0812 0.40 -0.9
980,384 + DvMF_0812 0.57 -1.1
980,570 + DvMF_0812 0.77 -2.8
980,753 + -1.0
980,761 - -2.5

Or see this region's nucleotide sequence