Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0776 and DvMF_0777 overlap by 4 nucleotides DvMF_0777 and DvMF_0778 are separated by 135 nucleotides DvMF_0778 and DvMF_0779 overlap by 1 nucleotides
DvMF_0776: DvMF_0776 - CheW protein (RefSeq), at 931,694 to 932,380
_0776
DvMF_0777: DvMF_0777 - Cobyrinic acid ac-diamide synthase (RefSeq), at 932,377 to 933,150
_0777
DvMF_0778: DvMF_0778 - MCP methyltransferase, CheR-type (RefSeq), at 933,286 to 934,164
_0778
DvMF_0779: DvMF_0779 - PBS lyase HEAT domain protein repeat-containing protein (RefSeq), at 934,164 to 936,089
_0779
Position (kb) 933
934
935 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 932.461 kb on - strand, within DvMF_0777 at 932.461 kb on - strand, within DvMF_0777 at 932.893 kb on - strand, within DvMF_0777 at 933.095 kb on - strand at 933.154 kb on - strand at 933.272 kb on - strand at 933.571 kb on - strand, within DvMF_0778 at 933.622 kb on + strand, within DvMF_0778 at 933.842 kb on - strand, within DvMF_0778 at 934.711 kb on - strand, within DvMF_0779 at 934.755 kb on - strand, within DvMF_0779 at 934.843 kb on + strand, within DvMF_0779 at 935.021 kb on - strand, within DvMF_0779 at 935.081 kb on + strand, within DvMF_0779
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml remove 932,461 - DvMF_0777 0.11 -0.5 932,461 - DvMF_0777 0.11 +1.3 932,893 - DvMF_0777 0.67 -2.6 933,095 - -2.1 933,154 - -0.9 933,272 - -0.7 933,571 - DvMF_0778 0.32 -0.9 933,622 + DvMF_0778 0.38 -2.1 933,842 - DvMF_0778 0.63 -1.8 934,711 - DvMF_0779 0.28 -0.1 934,755 - DvMF_0779 0.31 -0.3 934,843 + DvMF_0779 0.35 -0.1 935,021 - DvMF_0779 0.44 -4.2 935,081 + DvMF_0779 0.48 -2.9
Or see this region's nucleotide sequence