Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0765

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0764 and DvMF_0765 overlap by 4 nucleotidesDvMF_0765 and DvMF_0766 are separated by 338 nucleotides DvMF_0764: DvMF_0764 - UvrD/REP helicase (RefSeq), at 911,777 to 915,262 _0764 DvMF_0765: DvMF_0765 - hypothetical protein (RefSeq), at 915,259 to 918,561 _0765 DvMF_0766: DvMF_0766 - 2-nitropropane dioxygenase NPD (RefSeq), at 918,900 to 920,021 _0766 Position (kb) 915 916 917 918 919Strain fitness (log2 ratio) -2 -1 0 1at 914.380 kb on + strand, within DvMF_0764at 915.094 kb on - strandat 915.287 kb on - strandat 915.317 kb on - strandat 915.646 kb on + strand, within DvMF_0765at 915.896 kb on - strand, within DvMF_0765at 916.210 kb on - strand, within DvMF_0765at 916.505 kb on - strand, within DvMF_0765at 916.780 kb on - strand, within DvMF_0765at 917.204 kb on + strand, within DvMF_0765at 917.698 kb on + strand, within DvMF_0765at 918.461 kb on - strandat 918.538 kb on + strandat 918.543 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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914,380 + DvMF_0764 0.75 +1.6
915,094 - -1.0
915,287 - -0.0
915,317 - -0.1
915,646 + DvMF_0765 0.12 +1.0
915,896 - DvMF_0765 0.19 -1.0
916,210 - DvMF_0765 0.29 -1.2
916,505 - DvMF_0765 0.38 -0.6
916,780 - DvMF_0765 0.46 +0.4
917,204 + DvMF_0765 0.59 -0.0
917,698 + DvMF_0765 0.74 -0.8
918,461 - -0.0
918,538 + -1.9
918,543 + -2.3

Or see this region's nucleotide sequence