Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0598

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0597 and DvMF_0598 are separated by 260 nucleotidesDvMF_0598 and DvMF_0599 are separated by 282 nucleotides DvMF_0597: DvMF_0597 - phosphonate ABC transporter, ATPase subunit (RefSeq), at 708,362 to 709,174 _0597 DvMF_0598: DvMF_0598 - phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq), at 709,435 to 710,490 _0598 DvMF_0599: DvMF_0599 - HAD-superfamily hydrolase, subfamily IIA (RefSeq), at 710,773 to 711,540 _0599 Position (kb) 709 710 711Strain fitness (log2 ratio) -3 -2 -1 0 1at 708.917 kb on - strand, within DvMF_0597at 708.929 kb on + strand, within DvMF_0597at 709.020 kb on + strand, within DvMF_0597at 709.084 kb on - strand, within DvMF_0597at 709.694 kb on - strand, within DvMF_0598at 709.874 kb on + strand, within DvMF_0598at 710.185 kb on + strand, within DvMF_0598at 710.315 kb on + strand, within DvMF_0598at 710.750 kb on + strandat 710.903 kb on + strand, within DvMF_0599at 710.975 kb on + strand, within DvMF_0599at 710.983 kb on - strand, within DvMF_0599at 710.983 kb on - strand, within DvMF_0599at 711.111 kb on + strand, within DvMF_0599at 711.471 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
remove
708,917 - DvMF_0597 0.68 -0.4
708,929 + DvMF_0597 0.70 +0.2
709,020 + DvMF_0597 0.81 -0.4
709,084 - DvMF_0597 0.89 -0.6
709,694 - DvMF_0598 0.25 -2.0
709,874 + DvMF_0598 0.42 -3.3
710,185 + DvMF_0598 0.71 -1.3
710,315 + DvMF_0598 0.83 +0.0
710,750 + -0.8
710,903 + DvMF_0599 0.17 -0.4
710,975 + DvMF_0599 0.26 -0.7
710,983 - DvMF_0599 0.27 -0.3
710,983 - DvMF_0599 0.27 +0.6
711,111 + DvMF_0599 0.44 -1.6
711,471 - -0.8

Or see this region's nucleotide sequence