Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0588

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0587 and DvMF_0588 overlap by 4 nucleotidesDvMF_0588 and DvMF_0589 overlap by 4 nucleotides DvMF_0587: DvMF_0587 - hypothetical protein (RefSeq), at 696,310 to 697,458 _0587 DvMF_0588: DvMF_0588 - hypothetical protein (RefSeq), at 697,455 to 698,219 _0588 DvMF_0589: DvMF_0589 - glycosyl transferase, group 2 family protein (RefSeq), at 698,216 to 699,343 _0589 Position (kb) 697 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1at 696.629 kb on + strand, within DvMF_0587at 696.824 kb on + strand, within DvMF_0587at 696.837 kb on - strand, within DvMF_0587at 696.855 kb on + strand, within DvMF_0587at 696.868 kb on + strand, within DvMF_0587at 696.878 kb on + strand, within DvMF_0587at 697.069 kb on + strand, within DvMF_0587at 697.129 kb on + strand, within DvMF_0587at 697.154 kb on + strand, within DvMF_0587at 697.201 kb on + strand, within DvMF_0587at 697.204 kb on - strand, within DvMF_0587at 697.443 kb on - strandat 697.493 kb on + strandat 697.501 kb on - strandat 697.810 kb on - strand, within DvMF_0588at 697.845 kb on + strand, within DvMF_0588at 697.979 kb on + strand, within DvMF_0588at 698.076 kb on - strand, within DvMF_0588at 698.177 kb on + strandat 698.285 kb on - strandat 698.310 kb on + strandat 698.382 kb on - strand, within DvMF_0589at 698.506 kb on - strand, within DvMF_0589at 698.547 kb on - strand, within DvMF_0589at 698.932 kb on - strand, within DvMF_0589at 699.128 kb on + strand, within DvMF_0589

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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696,629 + DvMF_0587 0.28 +0.2
696,824 + DvMF_0587 0.45 +1.2
696,837 - DvMF_0587 0.46 +0.8
696,855 + DvMF_0587 0.47 -2.8
696,868 + DvMF_0587 0.49 +0.6
696,878 + DvMF_0587 0.49 -0.0
697,069 + DvMF_0587 0.66 +0.0
697,129 + DvMF_0587 0.71 +1.1
697,154 + DvMF_0587 0.73 +1.0
697,201 + DvMF_0587 0.78 +1.3
697,204 - DvMF_0587 0.78 +0.9
697,443 - -0.3
697,493 + +0.1
697,501 - -0.5
697,810 - DvMF_0588 0.46 -2.0
697,845 + DvMF_0588 0.51 -2.9
697,979 + DvMF_0588 0.68 -1.5
698,076 - DvMF_0588 0.81 -0.4
698,177 + -1.0
698,285 - -0.8
698,310 + -0.9
698,382 - DvMF_0589 0.15 -0.4
698,506 - DvMF_0589 0.26 -0.3
698,547 - DvMF_0589 0.29 -2.5
698,932 - DvMF_0589 0.63 -1.1
699,128 + DvMF_0589 0.81 -0.7

Or see this region's nucleotide sequence