Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0485

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0483 and DvMF_0484 are separated by 115 nucleotidesDvMF_0484 and DvMF_0485 are separated by 100 nucleotidesDvMF_0485 and DvMF_0486 overlap by 4 nucleotides DvMF_0483: DvMF_0483 - peptidase M48 Ste24p (RefSeq), at 567,426 to 568,898 _0483 DvMF_0484: DvMF_0484 - Appr-1-p processing domain protein (RefSeq), at 569,014 to 569,622 _0484 DvMF_0485: DvMF_0485 - ATP-dependent protease peptidase subunit (RefSeq), at 569,723 to 570,280 _0485 DvMF_0486: DvMF_0486 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (RefSeq), at 570,277 to 571,266 _0486 Position (kb) 569 570 571Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 569.117 kb on - strand, within DvMF_0484at 569.266 kb on + strand, within DvMF_0484at 569.360 kb on + strand, within DvMF_0484at 569.463 kb on + strand, within DvMF_0484at 569.471 kb on - strand, within DvMF_0484at 569.471 kb on - strand, within DvMF_0484at 569.585 kb on - strandat 569.665 kb on + strandat 569.679 kb on - strandat 569.799 kb on + strand, within DvMF_0485at 569.906 kb on - strand, within DvMF_0485at 570.296 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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569,117 - DvMF_0484 0.17 +0.3
569,266 + DvMF_0484 0.41 -1.0
569,360 + DvMF_0484 0.57 -3.9
569,463 + DvMF_0484 0.74 -0.7
569,471 - DvMF_0484 0.75 -3.0
569,471 - DvMF_0484 0.75 -0.9
569,585 - -0.3
569,665 + -1.1
569,679 - -1.3
569,799 + DvMF_0485 0.14 -2.8
569,906 - DvMF_0485 0.33 -1.4
570,296 - +1.3

Or see this region's nucleotide sequence