Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0466

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0465 and DvMF_0466 overlap by 4 nucleotidesDvMF_0466 and DvMF_0467 overlap by 4 nucleotides DvMF_0465: DvMF_0465 - response regulator receiver modulated CheB methylesterase (RefSeq), at 543,275 to 544,345 _0465 DvMF_0466: DvMF_0466 - MCP methyltransferase, CheR-type (RefSeq), at 544,342 to 545,229 _0466 DvMF_0467: DvMF_0467 - CheA signal transduction histidine kinase (RefSeq), at 545,226 to 547,400 _0467 Position (kb) 544 545 546Strain fitness (log2 ratio) -3 -2 -1 0 1at 543.362 kb on + strandat 543.383 kb on - strand, within DvMF_0465at 543.399 kb on - strand, within DvMF_0465at 543.399 kb on - strand, within DvMF_0465at 543.781 kb on - strand, within DvMF_0465at 543.862 kb on - strand, within DvMF_0465at 544.149 kb on - strand, within DvMF_0465at 544.341 kb on - strandat 544.601 kb on - strand, within DvMF_0466at 544.601 kb on - strand, within DvMF_0466at 544.813 kb on - strand, within DvMF_0466at 545.039 kb on - strand, within DvMF_0466at 545.262 kb on - strandat 545.316 kb on + strandat 545.713 kb on + strand, within DvMF_0467at 545.730 kb on + strand, within DvMF_0467at 545.779 kb on + strand, within DvMF_0467at 545.780 kb on - strand, within DvMF_0467

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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543,362 + -3.4
543,383 - DvMF_0465 0.10 -0.4
543,399 - DvMF_0465 0.12 -3.5
543,399 - DvMF_0465 0.12 -0.9
543,781 - DvMF_0465 0.47 -2.5
543,862 - DvMF_0465 0.55 -2.9
544,149 - DvMF_0465 0.82 -2.5
544,341 - -2.4
544,601 - DvMF_0466 0.29 -1.2
544,601 - DvMF_0466 0.29 -1.8
544,813 - DvMF_0466 0.53 -1.8
545,039 - DvMF_0466 0.78 -1.7
545,262 - -0.4
545,316 + -0.7
545,713 + DvMF_0467 0.22 +0.6
545,730 + DvMF_0467 0.23 -1.0
545,779 + DvMF_0467 0.25 -2.9
545,780 - DvMF_0467 0.25 -0.6

Or see this region's nucleotide sequence