Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0388

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0387 and DvMF_0388 are separated by 660 nucleotidesDvMF_0388 and DvMF_0389 are separated by 250 nucleotides DvMF_0387: DvMF_0387 - extracellular solute-binding protein family 3 (RefSeq), at 454,678 to 455,457 _0387 DvMF_0388: DvMF_0388 - hypothetical protein (RefSeq), at 456,118 to 456,942 _0388 DvMF_0389: DvMF_0389 - Beta-lactamase (RefSeq), at 457,193 to 458,038 _0389 Position (kb) 456 457Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 455.985 kb on - strandat 456.130 kb on - strandat 456.151 kb on + strandat 456.234 kb on + strand, within DvMF_0388at 456.253 kb on + strand, within DvMF_0388at 456.269 kb on + strand, within DvMF_0388at 456.737 kb on + strand, within DvMF_0388at 456.787 kb on - strand, within DvMF_0388at 457.256 kb on - strandat 457.309 kb on + strand, within DvMF_0389at 457.400 kb on + strand, within DvMF_0389at 457.458 kb on + strand, within DvMF_0389at 457.472 kb on - strand, within DvMF_0389at 457.534 kb on - strand, within DvMF_0389at 457.661 kb on - strand, within DvMF_0389

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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455,985 - -1.0
456,130 - -3.1
456,151 + -0.1
456,234 + DvMF_0388 0.14 -0.3
456,253 + DvMF_0388 0.16 -0.6
456,269 + DvMF_0388 0.18 -0.5
456,737 + DvMF_0388 0.75 -1.1
456,787 - DvMF_0388 0.81 +0.3
457,256 - -4.1
457,309 + DvMF_0389 0.14 -2.0
457,400 + DvMF_0389 0.24 -0.3
457,458 + DvMF_0389 0.31 -0.5
457,472 - DvMF_0389 0.33 +0.2
457,534 - DvMF_0389 0.40 +0.6
457,661 - DvMF_0389 0.55 -1.4

Or see this region's nucleotide sequence