Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0297

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemA and DvMF_0297 are separated by 102 nucleotidesDvMF_0297 and DvMF_0298 overlap by 14 nucleotides DvMF_0296: hemA - glutamyl-tRNA reductase (RefSeq), at 341,126 to 342,454 hemA DvMF_0297: DvMF_0297 - cytochrome c assembly protein (RefSeq), at 342,557 to 343,384 _0297 DvMF_0298: DvMF_0298 - siroheme synthase (RefSeq), at 343,371 to 344,057 _0298 Position (kb) 342 343 344Strain fitness (log2 ratio) -2 -1 0 1at 342.467 kb on - strandat 342.488 kb on - strandat 342.517 kb on + strandat 342.803 kb on - strand, within DvMF_0297at 343.068 kb on + strand, within DvMF_0297at 343.261 kb on + strand, within DvMF_0297at 344.191 kb on + strandat 344.227 kb on + strandat 344.296 kb on - strandat 344.298 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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342,467 - -0.7
342,488 - -2.2
342,517 + -0.1
342,803 - DvMF_0297 0.30 -0.1
343,068 + DvMF_0297 0.62 -2.4
343,261 + DvMF_0297 0.85 -1.1
344,191 + +0.4
344,227 + -1.6
344,296 - -1.4
344,298 + -0.5

Or see this region's nucleotide sequence