Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0238

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0237 and DvMF_0238 are separated by 342 nucleotidesDvMF_0238 and DvMF_0239 are separated by 221 nucleotides DvMF_0237: DvMF_0237 - putative CheA signal transduction histidine kinase (RefSeq), at 266,347 to 268,356 _0237 DvMF_0238: DvMF_0238 - hypothetical protein (RefSeq), at 268,699 to 268,971 _0238 DvMF_0239: DvMF_0239 - Beta tubulin, autoregulation binding site (RefSeq), at 269,193 to 271,886 _0239 Position (kb) 268 269Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 267.923 kb on - strand, within DvMF_0237at 268.006 kb on - strandat 268.041 kb on - strand, within DvMF_0237at 268.099 kb on - strand, within DvMF_0237at 268.439 kb on + strandat 268.447 kb on - strandat 268.457 kb on - strandat 268.459 kb on - strandat 268.479 kb on + strandat 268.503 kb on - strandat 268.532 kb on - strandat 268.624 kb on + strandat 268.658 kb on - strandat 268.904 kb on - strand, within DvMF_0238at 269.303 kb on + strandat 269.308 kb on + strandat 269.356 kb on - strandat 269.364 kb on - strandat 269.495 kb on + strand, within DvMF_0239at 269.503 kb on - strand, within DvMF_0239at 269.674 kb on + strand, within DvMF_0239at 269.777 kb on + strand, within DvMF_0239at 269.824 kb on + strand, within DvMF_0239

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
remove
267,923 - DvMF_0237 0.78 -0.1
268,006 - +1.9
268,041 - DvMF_0237 0.84 +0.9
268,099 - DvMF_0237 0.87 -1.6
268,439 + -0.1
268,447 - -3.1
268,457 - -0.6
268,459 - -0.6
268,479 + -0.6
268,503 - -1.7
268,532 - -0.8
268,624 + -1.4
268,658 - -3.7
268,904 - DvMF_0238 0.75 -1.9
269,303 + +0.3
269,308 + +0.1
269,356 - -0.7
269,364 - -1.3
269,495 + DvMF_0239 0.11 -0.4
269,503 - DvMF_0239 0.12 -0.9
269,674 + DvMF_0239 0.18 -1.1
269,777 + DvMF_0239 0.22 -3.7
269,824 + DvMF_0239 0.23 -1.2

Or see this region's nucleotide sequence