Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0176

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0174 and DvMF_0175 are separated by 162 nucleotidesDvMF_0175 and DvMF_0176 are separated by 2 nucleotidesDvMF_0176 and DvMF_0177 are separated by 485 nucleotides DvMF_0174: DvMF_0174 - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 190,667 to 191,680 _0174 DvMF_0175: DvMF_0175 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 191,843 to 192,373 _0175 DvMF_0176: DvMF_0176 - protein of unknown function DUF395 YeeE/YedE (RefSeq), at 192,376 to 192,900 _0176 DvMF_0177: DvMF_0177 - Lytic transglycosylase catalytic (RefSeq), at 193,386 to 194,675 _0177 Position (kb) 192 193Strain fitness (log2 ratio) -1 0 1 2at 191.512 kb on + strand, within DvMF_0174at 191.670 kb on + strandat 191.730 kb on + strandat 191.761 kb on + strandat 192.031 kb on + strand, within DvMF_0175at 192.185 kb on - strand, within DvMF_0175at 192.274 kb on + strand, within DvMF_0175at 192.439 kb on + strand, within DvMF_0176at 192.973 kb on + strandat 193.167 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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191,512 + DvMF_0174 0.83 +2.7
191,670 + -1.5
191,730 + -1.1
191,761 + -0.6
192,031 + DvMF_0175 0.35 -0.3
192,185 - DvMF_0175 0.64 -1.0
192,274 + DvMF_0175 0.81 -0.7
192,439 + DvMF_0176 0.12 -1.4
192,973 + -0.2
193,167 - -0.9

Or see this region's nucleotide sequence