Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0110

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0109 and DvMF_0110 are separated by 521 nucleotidesDvMF_0110 and clpX are separated by 7 nucleotides DvMF_0109: DvMF_0109 - trigger factor (RefSeq), at 117,805 to 119,103 _0109 DvMF_0110: DvMF_0110 - ATP-dependent Clp protease, proteolytic subunit ClpP (RefSeq), at 119,625 to 120,230 _0110 DvMF_0111: clpX - ATP-dependent protease ATP-binding subunit ClpX (RefSeq), at 120,238 to 121,776 clpX Position (kb) 119 120 121Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 119.069 kb on - strandat 119.270 kb on - strandat 119.875 kb on - strand, within DvMF_0110at 120.025 kb on - strand, within DvMF_0110at 120.201 kb on - strandat 120.240 kb on + strandat 120.435 kb on + strand, within clpXat 121.199 kb on + strand, within clpX

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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119,069 - -0.1
119,270 - -1.9
119,875 - DvMF_0110 0.41 -2.9
120,025 - DvMF_0110 0.66 -4.4
120,201 - -0.5
120,240 + -1.0
120,435 + clpX DvMF_0111 0.13 +0.8
121,199 + clpX DvMF_0111 0.62 -3.1

Or see this region's nucleotide sequence