Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0044

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0043 and DvMF_0044 are separated by 106 nucleotidesDvMF_0044 and DvMF_0045 are separated by 152 nucleotides DvMF_0043: DvMF_0043 - hypothetical protein (RefSeq), at 57,479 to 59,059 _0043 DvMF_0044: DvMF_0044 - Homocysteine formation from aspartate semialdehyde (COG2122 or apbE like component) (from data), at 59,166 to 59,999 _0044 DvMF_0045: DvMF_0045 - Endonuclease/exonuclease/phosphatase (RefSeq), at 60,152 to 61,366 _0045 Position (kb) 59 60Strain fitness (log2 ratio) -3 -2 -1 0 1at 58.228 kb on - strand, within DvMF_0043at 58.314 kb on - strand, within DvMF_0043at 58.519 kb on - strand, within DvMF_0043at 58.759 kb on + strand, within DvMF_0043at 58.785 kb on + strand, within DvMF_0043at 58.795 kb on + strand, within DvMF_0043at 58.803 kb on - strand, within DvMF_0043at 59.116 kb on + strandat 59.159 kb on + strandat 59.172 kb on - strandat 59.373 kb on - strand, within DvMF_0044at 59.375 kb on + strand, within DvMF_0044at 59.455 kb on - strand, within DvMF_0044at 59.503 kb on - strand, within DvMF_0044at 59.929 kb on + strandat 59.931 kb on - strandat 60.083 kb on + strandat 60.254 kb on + strandat 60.268 kb on - strandat 60.268 kb on - strandat 60.349 kb on - strand, within DvMF_0045at 60.349 kb on - strand, within DvMF_0045at 60.349 kb on - strand, within DvMF_0045at 60.349 kb on - strand, within DvMF_0045at 60.356 kb on + strand, within DvMF_0045at 60.526 kb on - strand, within DvMF_0045at 60.579 kb on + strand, within DvMF_0045at 60.589 kb on + strand, within DvMF_0045at 60.616 kb on + strand, within DvMF_0045at 60.654 kb on - strand, within DvMF_0045at 60.654 kb on - strand, within DvMF_0045at 60.661 kb on - strand, within DvMF_0045at 60.899 kb on + strand, within DvMF_0045at 60.991 kb on - strand, within DvMF_0045

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
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58,228 - DvMF_0043 0.47 -0.0
58,314 - DvMF_0043 0.53 -0.4
58,519 - DvMF_0043 0.66 -0.1
58,759 + DvMF_0043 0.81 -0.8
58,785 + DvMF_0043 0.83 -2.5
58,795 + DvMF_0043 0.83 -1.3
58,803 - DvMF_0043 0.84 -1.4
59,116 + -1.1
59,159 + +1.5
59,172 - -1.3
59,373 - DvMF_0044 0.25 -2.3
59,375 + DvMF_0044 0.25 -1.4
59,455 - DvMF_0044 0.35 -2.6
59,503 - DvMF_0044 0.40 -2.5
59,929 + -1.1
59,931 - +1.0
60,083 + -0.3
60,254 + -0.4
60,268 - -0.5
60,268 - -0.2
60,349 - DvMF_0045 0.16 -1.7
60,349 - DvMF_0045 0.16 +0.9
60,349 - DvMF_0045 0.16 -0.7
60,349 - DvMF_0045 0.16 -1.8
60,356 + DvMF_0045 0.17 -0.1
60,526 - DvMF_0045 0.31 -2.0
60,579 + DvMF_0045 0.35 -1.3
60,589 + DvMF_0045 0.36 +0.5
60,616 + DvMF_0045 0.38 -1.2
60,654 - DvMF_0045 0.41 -0.4
60,654 - DvMF_0045 0.41 -3.2
60,661 - DvMF_0045 0.42 -0.2
60,899 + DvMF_0045 0.61 -0.3
60,991 - DvMF_0045 0.69 -0.3

Or see this region's nucleotide sequence