Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0043 and DvMF_0044 are separated by 106 nucleotides DvMF_0044 and DvMF_0045 are separated by 152 nucleotides
DvMF_0043: DvMF_0043 - hypothetical protein (RefSeq), at 57,479 to 59,059
_0043
DvMF_0044: DvMF_0044 - Homocysteine formation from aspartate semialdehyde (COG2122 or apbE like component) (from data) , at 59,166 to 59,999
_0044
DvMF_0045: DvMF_0045 - Endonuclease/exonuclease/phosphatase (RefSeq), at 60,152 to 61,366
_0045
Position (kb)
59
60 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 58.228 kb on - strand, within DvMF_0043 at 58.314 kb on - strand, within DvMF_0043 at 58.519 kb on - strand, within DvMF_0043 at 58.759 kb on + strand, within DvMF_0043 at 58.785 kb on + strand, within DvMF_0043 at 58.795 kb on + strand, within DvMF_0043 at 58.803 kb on - strand, within DvMF_0043 at 59.116 kb on + strand at 59.159 kb on + strand at 59.172 kb on - strand at 59.373 kb on - strand, within DvMF_0044 at 59.375 kb on + strand, within DvMF_0044 at 59.455 kb on - strand, within DvMF_0044 at 59.503 kb on - strand, within DvMF_0044 at 59.929 kb on + strand at 59.931 kb on - strand at 60.083 kb on + strand at 60.254 kb on + strand at 60.268 kb on - strand at 60.268 kb on - strand at 60.349 kb on - strand, within DvMF_0045 at 60.349 kb on - strand, within DvMF_0045 at 60.349 kb on - strand, within DvMF_0045 at 60.349 kb on - strand, within DvMF_0045 at 60.356 kb on + strand, within DvMF_0045 at 60.526 kb on - strand, within DvMF_0045 at 60.579 kb on + strand, within DvMF_0045 at 60.589 kb on + strand, within DvMF_0045 at 60.616 kb on + strand, within DvMF_0045 at 60.654 kb on - strand, within DvMF_0045 at 60.654 kb on - strand, within DvMF_0045 at 60.661 kb on - strand, within DvMF_0045 at 60.899 kb on + strand, within DvMF_0045 at 60.991 kb on - strand, within DvMF_0045
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml remove 58,228 - DvMF_0043 0.47 -0.0 58,314 - DvMF_0043 0.53 -0.4 58,519 - DvMF_0043 0.66 -0.1 58,759 + DvMF_0043 0.81 -0.8 58,785 + DvMF_0043 0.83 -2.5 58,795 + DvMF_0043 0.83 -1.3 58,803 - DvMF_0043 0.84 -1.4 59,116 + -1.1 59,159 + +1.5 59,172 - -1.3 59,373 - DvMF_0044 0.25 -2.3 59,375 + DvMF_0044 0.25 -1.4 59,455 - DvMF_0044 0.35 -2.6 59,503 - DvMF_0044 0.40 -2.5 59,929 + -1.1 59,931 - +1.0 60,083 + -0.3 60,254 + -0.4 60,268 - -0.5 60,268 - -0.2 60,349 - DvMF_0045 0.16 -1.7 60,349 - DvMF_0045 0.16 +0.9 60,349 - DvMF_0045 0.16 -0.7 60,349 - DvMF_0045 0.16 -1.8 60,356 + DvMF_0045 0.17 -0.1 60,526 - DvMF_0045 0.31 -2.0 60,579 + DvMF_0045 0.35 -1.3 60,589 + DvMF_0045 0.36 +0.5 60,616 + DvMF_0045 0.38 -1.2 60,654 - DvMF_0045 0.41 -0.4 60,654 - DvMF_0045 0.41 -3.2 60,661 - DvMF_0045 0.42 -0.2 60,899 + DvMF_0045 0.61 -0.3 60,991 - DvMF_0045 0.69 -0.3
Or see this region's nucleotide sequence