Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0029

Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0027 and DvMF_0028 are separated by 137 nucleotidesDvMF_0028 and DvMF_0029 are separated by 202 nucleotidesDvMF_0029 and DvMF_0030 are separated by 756 nucleotides DvMF_0027: DvMF_0027 - indolepyruvate/phenylpyruvate decarboxylase (RefSeq), at 34,593 to 36,311 _0027 DvMF_0028: DvMF_0028 - hypothetical protein (RefSeq), at 36,449 to 37,012 _0028 DvMF_0029: DvMF_0029 - hypothetical protein (RefSeq), at 37,215 to 37,841 _0029 DvMF_0030: DvMF_0030 - hypothetical protein (RefSeq), at 38,598 to 38,939 _0030 Position (kb) 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 36.346 kb on + strandat 36.902 kb on - strand, within DvMF_0028at 37.041 kb on - strandat 37.177 kb on + strandat 37.487 kb on + strand, within DvMF_0029at 37.843 kb on + strandat 37.977 kb on - strandat 37.997 kb on + strandat 38.069 kb on + strandat 38.140 kb on - strandat 38.251 kb on + strandat 38.371 kb on + strandat 38.400 kb on + strandat 38.469 kb on - strandat 38.482 kb on - strandat 38.558 kb on - strandat 38.569 kb on - strandat 38.663 kb on + strand, within DvMF_0030at 38.703 kb on + strand, within DvMF_0030at 38.788 kb on - strand, within DvMF_0030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml
remove
36,346 + -0.5
36,902 - DvMF_0028 0.80 +0.2
37,041 - -0.7
37,177 + -1.1
37,487 + DvMF_0029 0.43 -1.7
37,843 + +3.5
37,977 - +0.0
37,997 + +0.9
38,069 + +0.5
38,140 - -0.5
38,251 + +0.2
38,371 + -0.5
38,400 + -0.6
38,469 - -3.0
38,482 - -0.7
38,558 - -1.3
38,569 - -0.5
38,663 + DvMF_0030 0.19 +0.2
38,703 + DvMF_0030 0.31 -0.6
38,788 - DvMF_0030 0.56 -2.2

Or see this region's nucleotide sequence