Experiment: MoLS4 with D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0027 and DvMF_0028 are separated by 137 nucleotides DvMF_0028 and DvMF_0029 are separated by 202 nucleotides DvMF_0029 and DvMF_0030 are separated by 756 nucleotides
DvMF_0027: DvMF_0027 - indolepyruvate/phenylpyruvate decarboxylase (RefSeq), at 34,593 to 36,311
_0027
DvMF_0028: DvMF_0028 - hypothetical protein (RefSeq), at 36,449 to 37,012
_0028
DvMF_0029: DvMF_0029 - hypothetical protein (RefSeq), at 37,215 to 37,841
_0029
DvMF_0030: DvMF_0030 - hypothetical protein (RefSeq), at 38,598 to 38,939
_0030
Position (kb)
37
38 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 36.346 kb on + strand at 36.902 kb on - strand, within DvMF_0028 at 37.041 kb on - strand at 37.177 kb on + strand at 37.487 kb on + strand, within DvMF_0029 at 37.843 kb on + strand at 37.977 kb on - strand at 37.997 kb on + strand at 38.069 kb on + strand at 38.140 kb on - strand at 38.251 kb on + strand at 38.371 kb on + strand at 38.400 kb on + strand at 38.469 kb on - strand at 38.482 kb on - strand at 38.558 kb on - strand at 38.569 kb on - strand at 38.663 kb on + strand, within DvMF_0030 at 38.703 kb on + strand, within DvMF_0030 at 38.788 kb on - strand, within DvMF_0030
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.0625 mg/ml remove 36,346 + -0.5 36,902 - DvMF_0028 0.80 +0.2 37,041 - -0.7 37,177 + -1.1 37,487 + DvMF_0029 0.43 -1.7 37,843 + +3.5 37,977 - +0.0 37,997 + +0.9 38,069 + +0.5 38,140 - -0.5 38,251 + +0.2 38,371 + -0.5 38,400 + -0.6 38,469 - -3.0 38,482 - -0.7 38,558 - -1.3 38,569 - -0.5 38,663 + DvMF_0030 0.19 +0.2 38,703 + DvMF_0030 0.31 -0.6 38,788 - DvMF_0030 0.56 -2.2
Or see this region's nucleotide sequence