Strain Fitness in Shewanella amazonensis SB2B around Sama_3589

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
4,220,817	+				-3.4
4,220,817	+				-1.6
4,220,818	-				+1.0
4,220,818	-				+1.6
4,220,818	-				+0.8
4,220,906	-				-0.8
4,220,953	+		Sama_3588	0.14	-1.4
4,220,953	+		Sama_3588	0.14	+0.1
4,220,957	+		Sama_3588	0.15	-0.5
4,220,957	+		Sama_3588	0.15	-0.1
4,220,957	+		Sama_3588	0.15	+2.6
4,220,957	+		Sama_3588	0.15	+0.8
4,220,957	+		Sama_3588	0.15	+1.4
4,220,957	+		Sama_3588	0.15	-0.7
4,220,957	+		Sama_3588	0.15	+1.2
4,220,957	+		Sama_3588	0.15	+1.9
4,220,957	+		Sama_3588	0.15	-0.6
4,220,957	+		Sama_3588	0.15	+1.7
4,220,957	+		Sama_3588	0.15	-0.6
4,220,957	+		Sama_3588	0.15	-1.9
4,220,957	+		Sama_3588	0.15	-0.9
4,220,957	+		Sama_3588	0.15	-0.9
4,220,957	+		Sama_3588	0.15	+0.2
4,220,957	+		Sama_3588	0.15	+0.8
4,220,958	-		Sama_3588	0.15	-0.5
4,220,958	-		Sama_3588	0.15	+0.2
4,220,958	-		Sama_3588	0.15	-0.0
4,220,958	-		Sama_3588	0.15	+1.3
4,220,958	-		Sama_3588	0.15	-0.3
4,220,958	-		Sama_3588	0.15	-1.1
4,220,958	-		Sama_3588	0.15	+0.8
4,220,958	-		Sama_3588	0.15	-1.9
4,220,958	-		Sama_3588	0.15	-1.2
4,220,958	-		Sama_3588	0.15	+0.6
4,221,118	+		Sama_3588	0.31	+1.8
4,221,168	+		Sama_3588	0.36	-0.2
4,221,168	+		Sama_3588	0.36	+1.7
4,221,168	+		Sama_3588	0.36	-2.3
4,221,168	+		Sama_3588	0.36	+0.3
4,221,168	+		Sama_3588	0.36	+0.7
4,221,169	-		Sama_3588	0.36	+0.9
4,221,169	-		Sama_3588	0.36	-0.3
4,221,169	-		Sama_3588	0.36	+0.0
4,221,187	+		Sama_3588	0.38	+1.7
4,221,187	+		Sama_3588	0.38	-0.9
4,221,187	+		Sama_3588	0.38	-2.2
4,221,187	+		Sama_3588	0.38	-1.8
4,221,188	-		Sama_3588	0.38	-0.5
4,221,188	-		Sama_3588	0.38	-0.0
4,221,188	-		Sama_3588	0.38	+1.5
4,221,188	-		Sama_3588	0.38	-0.2
4,221,188	-		Sama_3588	0.38	-2.9
4,221,188	-		Sama_3588	0.38	+1.4
4,221,296	+		Sama_3588	0.50	+0.3
4,221,296	+		Sama_3588	0.50	-1.0
4,221,297	-		Sama_3588	0.50	+2.2
4,221,297	-		Sama_3588	0.50	-2.1
4,221,297	-		Sama_3588	0.50	+0.6
4,221,297	-		Sama_3588	0.50	-1.2
4,221,297	-		Sama_3588	0.50	-3.0
4,221,297	-		Sama_3588	0.50	-2.7
4,221,381	+		Sama_3588	0.58	+1.5
4,221,381	+		Sama_3588	0.58	-1.6
4,221,381	+		Sama_3588	0.58	-1.2
4,221,382	-		Sama_3588	0.58	+1.6
4,221,382	-		Sama_3588	0.58	+0.0
4,221,382	-		Sama_3588	0.58	-0.9
4,221,401	+		Sama_3588	0.60	-0.2
4,221,401	+		Sama_3588	0.60	+1.8
4,221,401	+		Sama_3588	0.60	-1.1
4,221,402	-		Sama_3588	0.60	-2.0
4,221,402	-		Sama_3588	0.60	+1.7
4,221,418	+		Sama_3588	0.62	-2.7
4,221,418	+		Sama_3588	0.62	-0.5
4,221,418	+		Sama_3588	0.62	-2.8
4,221,418	+		Sama_3588	0.62	-3.1
4,221,418	+		Sama_3588	0.62	-1.9
4,221,418	+		Sama_3588	0.62	-1.2
4,221,418	+		Sama_3588	0.62	-0.4
4,221,419	-		Sama_3588	0.62	-1.4
4,221,419	-		Sama_3588	0.62	-0.2
4,221,421	+		Sama_3588	0.62	+1.8
4,221,421	+		Sama_3588	0.62	-0.4
4,221,421	+		Sama_3588	0.62	-2.7
4,221,421	+		Sama_3588	0.62	-1.8
4,221,421	+		Sama_3588	0.62	+1.7
4,221,421	+		Sama_3588	0.62	+1.4
4,221,422	-		Sama_3588	0.63	+0.1
4,221,422	-		Sama_3588	0.63	+1.9
4,221,422	-		Sama_3588	0.63	-1.3
4,221,422	-		Sama_3588	0.63	-0.5
4,221,422	-		Sama_3588	0.63	-2.3
4,221,422	-		Sama_3588	0.63	-1.6
4,221,435	+		Sama_3588	0.64	-1.6
4,221,435	+		Sama_3588	0.64	-4.5
4,221,435	+		Sama_3588	0.64	-1.6
4,221,435	+		Sama_3588	0.64	+0.9
4,221,435	+		Sama_3588	0.64	-2.2
4,221,436	-		Sama_3588	0.64	-0.9
4,221,436	-		Sama_3588	0.64	-1.9
4,221,436	-		Sama_3588	0.64	-1.2
4,221,436	-		Sama_3588	0.64	+0.1
4,221,436	-		Sama_3588	0.64	-0.1
4,221,436	-		Sama_3588	0.64	-3.3
4,221,483	+		Sama_3588	0.69	-0.2
4,221,507	+		Sama_3588	0.71	-2.2
4,221,507	+		Sama_3588	0.71	-1.6
4,221,507	+		Sama_3588	0.71	-1.6
4,221,507	+		Sama_3588	0.71	-0.4
4,221,508	-		Sama_3588	0.71	-1.2
4,221,508	-		Sama_3588	0.71	+1.0
4,221,508	-		Sama_3588	0.71	-1.4
4,221,508	-		Sama_3588	0.71	+1.1
4,221,508	-		Sama_3588	0.71	-0.4
4,221,586	+		Sama_3588	0.79	+1.6
4,221,586	+		Sama_3588	0.79	-0.8
4,221,587	-		Sama_3588	0.80	+1.2
4,221,604	+		Sama_3588	0.81	-0.4
4,221,605	-		Sama_3588	0.81	-0.4
4,221,605	-		Sama_3588	0.81	+0.2
4,221,651	+		Sama_3588	0.86	-0.6
4,221,651	+		Sama_3588	0.86	-1.6
4,221,652	-		Sama_3588	0.86	-1.0
4,221,652	-		Sama_3588	0.86	+0.3
4,221,722	-				-0.2
4,221,722	-				-0.9
4,221,722	-				-0.8
4,221,865	+				-2.0
4,221,865	+				-0.2
4,221,865	+				-0.5
4,221,866	-				-1.2
4,221,866	-				+2.2
4,221,894	+		Sama_3589	0.12	-1.8
4,221,895	-		Sama_3589	0.12	-0.2
4,221,895	-		Sama_3589	0.12	+0.4
4,221,901	+		Sama_3589	0.13	+0.0
4,221,901	+		Sama_3589	0.13	-0.4
4,221,901	+		Sama_3589	0.13	-0.6
4,221,902	-		Sama_3589	0.13	-3.3
4,221,902	-		Sama_3589	0.13	-1.2
4,221,902	-		Sama_3589	0.13	-0.1
4,221,902	-		Sama_3589	0.13	-1.6
4,222,008	-		Sama_3589	0.24	+1.3
4,222,008	-		Sama_3589	0.24	+0.6
4,222,030	+		Sama_3589	0.26	-1.4
4,222,030	+		Sama_3589	0.26	+0.1
4,222,030	+		Sama_3589	0.26	+0.2
4,222,030	+		Sama_3589	0.26	+1.3
4,222,030	+		Sama_3589	0.26	-2.8
4,222,030	+		Sama_3589	0.26	-1.2
4,222,030	+		Sama_3589	0.26	+2.5
4,222,031	-		Sama_3589	0.26	+1.0
4,222,031	-		Sama_3589	0.26	-0.9
4,222,042	+		Sama_3589	0.28	-1.4
4,222,042	+		Sama_3589	0.28	-3.2
4,222,042	+		Sama_3589	0.28	-1.1
4,222,042	+		Sama_3589	0.28	+0.2
4,222,042	+		Sama_3589	0.28	-1.0
4,222,042	+		Sama_3589	0.28	-0.8
4,222,042	+		Sama_3589	0.28	-0.0
4,222,043	-		Sama_3589	0.28	+0.3
4,222,043	-		Sama_3589	0.28	+0.7
4,222,043	-		Sama_3589	0.28	-3.8
4,222,043	-		Sama_3589	0.28	+1.1
4,222,043	-		Sama_3589	0.28	+1.7
4,222,152	+		Sama_3589	0.39	-0.6
4,222,153	-		Sama_3589	0.39	+1.2
4,222,163	+		Sama_3589	0.40	+0.9
4,222,164	-		Sama_3589	0.40	+0.1
4,222,224	+		Sama_3589	0.46	+0.9
4,222,224	+		Sama_3589	0.46	-2.0
4,222,224	+		Sama_3589	0.46	-3.1
4,222,224	+		Sama_3589	0.46	-1.1
4,222,224	+		Sama_3589	0.46	+0.2
4,222,225	-		Sama_3589	0.47	+1.0
4,222,225	-		Sama_3589	0.47	+2.6
4,222,225	-		Sama_3589	0.47	+0.1
4,222,251	+		Sama_3589	0.49	+3.4
4,222,251	+		Sama_3589	0.49	+1.4
4,222,251	+		Sama_3589	0.49	-3.5
4,222,251	+		Sama_3589	0.49	+1.5
4,222,375	+		Sama_3589	0.62	+0.7
4,222,375	+		Sama_3589	0.62	+3.2
4,222,376	-		Sama_3589	0.62	-2.4
4,222,543	-		Sama_3589	0.80	+1.2
4,222,543	-		Sama_3589	0.80	-0.5
4,222,559	+		Sama_3589	0.81	+0.4
4,222,559	+		Sama_3589	0.81	-1.3
4,222,559	+		Sama_3589	0.81	-2.8
4,222,559	+		Sama_3589	0.81	-2.8
4,222,559	+		Sama_3589	0.81	-1.0
4,222,560	-		Sama_3589	0.81	+1.7
4,222,560	-		Sama_3589	0.81	-0.0
4,222,560	-		Sama_3589	0.81	+3.5
4,222,560	-		Sama_3589	0.81	-2.3
4,222,560	-		Sama_3589	0.81	-0.1
4,222,587	+		Sama_3589	0.84	+1.8
4,222,587	+		Sama_3589	0.84	-0.9
4,222,587	+		Sama_3589	0.84	-0.4
4,222,587	+		Sama_3589	0.84	-0.4
4,222,587	+		Sama_3589	0.84	-2.6
4,222,587	+		Sama_3589	0.84	+0.0
4,222,588	-		Sama_3589	0.84	-0.2
4,222,588	-		Sama_3589	0.84	+0.5
4,222,588	-		Sama_3589	0.84	-1.4
4,222,588	-		Sama_3589	0.84	+1.1
4,222,588	-		Sama_3589	0.84	+2.1
4,222,588	-		Sama_3589	0.84	-2.9
4,222,588	-		Sama_3589	0.84	-1.6
4,222,603	-		Sama_3589	0.86	-1.4
4,222,657	+				+0.4
4,222,657	+				+0.4
4,222,657	+				+1.8
4,222,657	+				+1.5
4,222,658	-				-2.5
4,222,658	-				-1.2
4,222,731	+				+0.4
4,222,731	+				-0.1
4,222,732	-				+0.1
4,222,744	+				-1.5
4,222,744	+				-0.6
4,222,744	+				-0.8
4,222,745	-				-0.8
4,222,745	-				-0.5
4,222,768	+				-3.8
4,222,769	-				-0.7
4,222,769	-				+0.1
4,222,769	-				-2.5
4,222,769	-				+1.6
4,222,789	+				+1.8
4,222,789	+				-1.4
4,222,790	-				-0.9
4,222,790	-				-0.6
4,222,790	-				-1.1
4,222,832	+		Sama_3590	0.15	-0.9
4,222,985	+		Sama_3590	0.39	+1.3
4,222,985	+		Sama_3590	0.39	+4.4
4,222,985	+		Sama_3590	0.39	+0.1
4,222,985	+		Sama_3590	0.39	+1.6
4,222,985	+		Sama_3590	0.39	-0.7
4,222,986	-		Sama_3590	0.39	+0.2
4,222,986	-		Sama_3590	0.39	-3.1
4,222,986	-		Sama_3590	0.39	-2.4
4,222,986	-		Sama_3590	0.39	-0.1
4,222,986	-		Sama_3590	0.39	-1.6
4,222,986	-		Sama_3590	0.39	-1.9
4,222,986	-		Sama_3590	0.39	+0.4
4,222,986	-		Sama_3590	0.39	+2.0
4,222,986	-		Sama_3590	0.39	-2.5
4,222,986	-		Sama_3590	0.39	-2.4
4,222,986	-		Sama_3590	0.39	+1.8
4,223,046	-		Sama_3590	0.48	-2.9
4,223,054	+		Sama_3590	0.50	+1.6
4,223,055	-		Sama_3590	0.50	-3.0
4,223,097	+		Sama_3590	0.56	+1.1
4,223,097	+		Sama_3590	0.56	+0.9
4,223,097	+		Sama_3590	0.56	-3.0
4,223,097	+		Sama_3590	0.56	-2.4
4,223,097	+		Sama_3590	0.56	+0.1
4,223,097	+		Sama_3590	0.56	+0.9
4,223,097	+		Sama_3590	0.56	-0.2
4,223,097	+		Sama_3590	0.56	+0.2
4,223,098	-		Sama_3590	0.56	-0.2
4,223,098	-		Sama_3590	0.56	-2.8
4,223,098	-		Sama_3590	0.56	+0.9
4,223,098	-		Sama_3590	0.56	+2.0
4,223,098	-		Sama_3590	0.56	-2.5
4,223,098	-		Sama_3590	0.56	+1.7
4,223,098	-		Sama_3590	0.56	+1.5
4,223,174	+		Sama_3590	0.68	-0.6
4,223,223	+		Sama_3590	0.76	+2.2
4,223,223	+		Sama_3590	0.76	+0.7
4,223,224	-		Sama_3590	0.76	-2.7
4,223,224	-		Sama_3590	0.76	-1.1
4,223,224	-		Sama_3590	0.76	+0.7
4,223,290	-		Sama_3590	0.86	-1.4
4,223,290	-		Sama_3590	0.86	-1.7
4,223,303	-		Sama_3590	0.88	+0.4
4,223,312	+		Sama_3590	0.90	-0.1
4,223,312	+		Sama_3590	0.90	-0.5
4,223,313	-				-1.2
4,223,328	-				-1.4
4,223,328	-				-1.6
4,223,328	-				+0.3
4,223,377	+				-0.7
4,223,377	+				+0.4
4,223,378	-				+0.6
4,223,378	-				-1.4
4,223,378	-				-1.4
4,223,378	-				-0.2
4,223,411	+				-0.4
4,223,411	+				-0.3
4,223,411	+				-0.3
4,223,411	+				-0.9
4,223,411	+				+1.0
4,223,411	+				+1.6
4,223,411	+				+2.9
4,223,411	+				+0.6
4,223,411	+				-2.0
4,223,411	+				+1.1
4,223,411	+				+0.5
4,223,411	+				-0.6
4,223,411	+				+0.7
4,223,411	+				-2.4
4,223,411	+				-1.2
4,223,412	-				+1.9
4,223,412	-				-2.3
4,223,412	-				+1.4
4,223,412	-				+1.2
4,223,412	-				-0.3
4,223,414	+				-3.4
4,223,414	+				-2.1
4,223,414	+				-2.4
4,223,414	+				-1.7
4,223,414	+				+0.6
4,223,414	+				+1.1
4,223,414	+				+2.6
4,223,415	-				+0.1
4,223,415	-				-0.1
4,223,415	-				-4.0
4,223,415	-				-2.3
4,223,415	-				+1.2
4,223,415	-				-1.3
4,223,441	-				-1.7
4,223,465	+				+0.1
4,223,466	-				-2.4
4,223,466	-				+1.4
4,223,501	+				-3.1
4,223,502	-				+1.7
4,223,502	-				-1.5
4,223,502	-				-0.6
4,223,503	+				+0.5
4,223,504	-				+2.4
4,223,504	-				-1.6
4,223,504	-				-2.3
4,223,504	-				-0.5
4,223,504	-				+1.4
4,223,563	+				-1.8
4,223,563	+				+0.7
4,223,567	+				+1.4
4,223,567	+				+0.9
4,223,567	+				+0.1
4,223,567	+				-1.6
4,223,567	+				+0.5
4,223,567	+				+1.0
4,223,568	-				+0.4
4,223,602	+				+0.8
4,223,602	+				+0.6
4,223,602	+				-0.9
4,223,602	+				+1.8
4,223,602	+				+0.6
4,223,602	+				+4.6
4,223,602	+				-1.9
4,223,602	+				-0.2
4,223,603	-				-0.4
4,223,603	-				+0.1
4,223,603	-				-2.2
4,223,603	-				+1.2
4,223,603	-				-1.4
4,223,611	+				-0.9
4,223,611	+				+1.9
4,223,611	+				+1.8
4,223,611	+				-0.2
4,223,611	+				-2.2
4,223,611	+				-0.9
4,223,611	+				-2.2
4,223,612	-				-1.6
4,223,627	+		Sama_3591	0.13	+0.5
4,223,627	+		Sama_3591	0.13	+0.9
4,223,627	+		Sama_3591	0.13	-0.2
4,223,627	+		Sama_3591	0.13	-0.2
4,223,628	-		Sama_3591	0.14	+0.6
4,223,628	-		Sama_3591	0.14	+0.5
4,223,633	+		Sama_3591	0.15	+2.0
4,223,664	-		Sama_3591	0.26	+3.1
4,223,683	+		Sama_3591	0.32	+0.2
4,223,684	-		Sama_3591	0.32	+2.3
4,223,691	+		Sama_3591	0.35	-0.5
4,223,691	+		Sama_3591	0.35	+1.6
4,223,691	+		Sama_3591	0.35	-0.5
4,223,691	+		Sama_3591	0.35	+1.1
4,223,691	+		Sama_3591	0.35	-0.1
4,223,691	+		Sama_3591	0.35	+2.3
4,223,691	+		Sama_3591	0.35	-0.9
4,223,691	+		Sama_3591	0.35	+0.4
4,223,691	+		Sama_3591	0.35	-1.6
4,223,692	-		Sama_3591	0.35	-0.0
4,223,692	-		Sama_3591	0.35	-1.8
4,223,692	-		Sama_3591	0.35	+1.6
4,223,692	-		Sama_3591	0.35	+1.8
4,223,692	-		Sama_3591	0.35	+0.6
4,223,692	-		Sama_3591	0.35	-1.2
4,223,692	-		Sama_3591	0.35	-3.5
4,223,692	-		Sama_3591	0.35	+3.0
4,223,692	-		Sama_3591	0.35	+2.0
4,223,707	+		Sama_3591	0.40	-1.9
4,223,707	+		Sama_3591	0.40	-0.4
4,223,707	+		Sama_3591	0.40	-1.2
4,223,707	+		Sama_3591	0.40	+0.4
4,223,709	+		Sama_3591	0.41	+0.1
4,223,709	+		Sama_3591	0.41	+0.9
4,223,709	+		Sama_3591	0.41	-0.0
4,223,709	+		Sama_3591	0.41	+2.8
4,223,710	-		Sama_3591	0.41	+2.0
4,223,710	-		Sama_3591	0.41	+1.2
4,223,710	-		Sama_3591	0.41	-0.2
4,223,710	-		Sama_3591	0.41	-0.9
4,223,710	-		Sama_3591	0.41	-1.4
4,223,739	-		Sama_3591	0.51	+3.3
4,223,739	-		Sama_3591	0.51	-0.5
4,223,739	-		Sama_3591	0.51	-2.3
4,223,739	-		Sama_3591	0.51	+0.6
4,223,739	-		Sama_3591	0.51	-1.2