Strain Fitness in Shewanella amazonensis SB2B around Sama_3228

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,819,973	-				+0.2
3,819,973	-				-1.3
3,819,986	+				-2.3
3,819,987	-				+0.1
3,819,987	-				-0.8
3,819,991	+				-1.2
3,819,991	+				-2.6
3,819,991	+				+1.2
3,819,991	+				-0.9
3,819,991	+				-3.5
3,819,992	-				-0.8
3,819,992	-				-1.3
3,819,992	-				-1.9
3,819,992	-				+1.6
3,819,992	-				-1.8
3,819,992	-				-1.2
3,819,992	-				+1.4
3,819,992	-				-0.3
3,819,992	-				-2.3
3,819,992	-				-1.1
3,820,011	+				-4.8
3,820,011	+				-2.3
3,820,018	-				+1.4
3,820,056	+				-0.5
3,820,056	+				-2.2
3,820,056	+				+0.3
3,820,057	-				+0.0
3,820,057	-				-2.8
3,820,068	+				+0.6
3,820,068	+				-0.5
3,820,068	+				+1.7
3,820,068	+				+2.2
3,820,069	-				+1.2
3,820,069	-				+2.1
3,820,069	-				+1.2
3,820,069	-				-1.1
3,820,069	-				-2.8
3,820,069	-				+1.4
3,820,075	+				-1.3
3,820,075	+				-1.6
3,820,075	+				-1.9
3,820,075	+				-0.5
3,820,076	-				-1.5
3,820,076	-				-1.2
3,820,076	-				+1.6
3,820,076	-				-0.3
3,820,076	-				-2.8
3,820,076	-				-2.2
3,820,079	+				+1.1
3,820,141	+				-2.2
3,820,141	+				+0.2
3,820,141	+				+0.2
3,820,142	-				+1.1
3,820,142	-				-3.1
3,820,142	-				-0.6
3,820,166	+				+1.7
3,820,166	+				-1.8
3,820,166	+				-0.6
3,820,166	+				+1.4
3,820,166	+				-2.3
3,820,166	+				+2.5
3,820,166	+				-1.6
3,820,166	+				+2.2
3,820,167	-				-0.6
3,820,167	-				+1.0
3,820,167	-				-0.3
3,820,185	+				-0.6
3,820,196	+				-0.3
3,820,196	+				+0.8
3,820,196	+				-1.1
3,820,197	-				-0.2
3,820,197	-				-1.4
3,820,197	-				-1.3
3,820,197	-				+0.3
3,820,197	-				+3.2
3,820,197	-				+1.3
3,820,202	+		Sama_3227	0.10	-3.0
3,820,202	+		Sama_3227	0.10	-1.3
3,820,202	+		Sama_3227	0.10	-2.3
3,820,202	+		Sama_3227	0.10	-2.3
3,820,202	+		Sama_3227	0.10	-0.6
3,820,202	+		Sama_3227	0.10	-0.7
3,820,203	-		Sama_3227	0.11	-0.3
3,820,203	-		Sama_3227	0.11	-0.8
3,820,203	-		Sama_3227	0.11	+1.5
3,820,203	-		Sama_3227	0.11	-1.3
3,820,203	-		Sama_3227	0.11	-2.3
3,820,203	-		Sama_3227	0.11	-0.8
3,820,203	-		Sama_3227	0.11	-0.2
3,820,203	-		Sama_3227	0.11	+0.5
3,820,203	-		Sama_3227	0.11	+0.8
3,820,203	-		Sama_3227	0.11	+1.0
3,820,203	-		Sama_3227	0.11	+0.3
3,820,203	-		Sama_3227	0.11	-0.8
3,820,203	-		Sama_3227	0.11	-1.6
3,820,206	+		Sama_3227	0.11	+0.4
3,820,206	+		Sama_3227	0.11	-3.3
3,820,206	+		Sama_3227	0.11	+2.7
3,820,206	+		Sama_3227	0.11	+1.7
3,820,207	-		Sama_3227	0.12	-0.3
3,820,207	-		Sama_3227	0.12	-1.6
3,820,207	-		Sama_3227	0.12	-0.7
3,820,207	-		Sama_3227	0.12	+0.8
3,820,221	+		Sama_3227	0.15	+0.4
3,820,221	+		Sama_3227	0.15	-0.2
3,820,229	+		Sama_3227	0.17	-1.1
3,820,229	+		Sama_3227	0.17	+2.2
3,820,229	+		Sama_3227	0.17	-1.1
3,820,229	+		Sama_3227	0.17	-1.8
3,820,230	-		Sama_3227	0.17	-3.0
3,820,230	-		Sama_3227	0.17	-0.1
3,820,230	-		Sama_3227	0.17	+0.5
3,820,301	+		Sama_3227	0.35	-1.1
3,820,301	+		Sama_3227	0.35	-3.3
3,820,309	+		Sama_3227	0.37	-1.5
3,820,316	+		Sama_3227	0.39	-0.1
3,820,342	-		Sama_3227	0.46	+2.6
3,820,379	+		Sama_3227	0.55	-1.0
3,820,379	+		Sama_3227	0.55	-0.3
3,820,395	+		Sama_3227	0.59	-2.1
3,820,455	+		Sama_3227	0.74	+0.7
3,820,455	+		Sama_3227	0.74	-2.1
3,820,455	+		Sama_3227	0.74	-0.7
3,820,456	-		Sama_3227	0.74	+1.4
3,820,478	-		Sama_3227	0.80	+1.0
3,820,478	-		Sama_3227	0.80	-0.2
3,820,478	-		Sama_3227	0.80	+0.4
3,820,530	+				-1.6
3,820,556	+				-1.1
3,820,556	+				-2.3
3,820,556	+				-0.3
3,820,557	-				+0.0
3,820,557	-				+1.2
3,820,557	-				+1.5
3,820,568	-				+1.6
3,820,583	+				+2.2
3,820,583	+				-1.0
3,820,584	-				-0.8
3,820,600	+				+0.1
3,820,600	+				-1.8
3,820,600	+				-2.4
3,820,600	+				-0.3
3,820,601	-				+1.4
3,820,601	-				+1.0
3,820,601	-				+3.6
3,820,601	-				+1.8
3,820,601	-				+1.1
3,820,613	+				-2.9
3,820,655	+				-0.3
3,820,655	+				+1.0
3,820,655	+				-0.6
3,820,655	+				+1.8
3,820,655	+				+0.2
3,820,655	+				-3.5
3,820,655	+				+3.2
3,820,655	+				+0.7
3,820,655	+				+1.1
3,820,655	+				+0.8
3,820,655	+				+1.8
3,820,655	+				-2.7
3,820,655	+				+1.9
3,820,655	+				+0.5
3,820,655	+				-2.2
3,820,655	+				-0.4
3,820,656	-				-2.1
3,820,656	-				-0.2
3,820,656	-				-2.8
3,820,656	-				-0.8
3,820,656	-				-0.8
3,820,656	-				-1.1
3,820,656	-				-0.0
3,820,656	-				+1.4
3,820,656	-				-1.3
3,820,656	-				-0.5
3,820,656	-				-2.1
3,820,661	+				-2.1
3,820,662	-				-1.2
3,820,662	-				+1.4
3,820,737	+				+0.8
3,820,737	+				+0.2
3,820,737	+				-1.8
3,820,737	+				+1.5
3,820,737	+				+1.2
3,820,738	-				+1.8
3,820,738	-				-0.5
3,820,738	-				-1.6
3,820,826	+				+0.8
3,820,833	+				+0.9
3,820,833	+				-0.8
3,820,833	+				+1.4
3,820,833	+				+4.1
3,820,834	-				+2.3
3,820,834	-				+2.5
3,820,834	-				+0.8
3,820,834	-				+1.3
3,820,868	-				+1.7
3,820,868	-				-0.4
3,820,868	-				+0.2
3,820,929	-				-0.3
3,820,929	-				+0.5
3,820,929	-				+1.3
3,820,929	-				-3.6
3,820,929	-				-0.3
3,820,985	+		Sama_3228	0.15	-1.6
3,820,985	+		Sama_3228	0.15	-0.7
3,820,986	-		Sama_3228	0.15	+0.9
3,821,014	+		Sama_3228	0.17	-0.2
3,821,033	+		Sama_3228	0.19	-1.6
3,821,033	+		Sama_3228	0.19	+0.3
3,821,033	+		Sama_3228	0.19	+0.9
3,821,034	-		Sama_3228	0.19	+0.6
3,821,034	-		Sama_3228	0.19	-1.3
3,821,034	-		Sama_3228	0.19	-1.3
3,821,034	-		Sama_3228	0.19	+0.9
3,821,034	-		Sama_3228	0.19	-0.5
3,821,068	+		Sama_3228	0.22	-2.3
3,821,068	+		Sama_3228	0.22	-0.7
3,821,069	-		Sama_3228	0.22	-1.1
3,821,069	-		Sama_3228	0.22	+1.0
3,821,086	+		Sama_3228	0.23	-0.8
3,821,087	-		Sama_3228	0.23	-2.4
3,821,090	+		Sama_3228	0.24	+0.1
3,821,155	+		Sama_3228	0.29	-1.9
3,821,156	-		Sama_3228	0.29	-1.3
3,821,156	-		Sama_3228	0.29	+0.6
3,821,171	+		Sama_3228	0.31	-1.9
3,821,171	+		Sama_3228	0.31	+0.3
3,821,172	-		Sama_3228	0.31	+0.5
3,821,172	-		Sama_3228	0.31	-2.1
3,821,266	-		Sama_3228	0.39	-1.7
3,821,431	+		Sama_3228	0.53	+1.3
3,821,518	+		Sama_3228	0.61	-0.3
3,821,563	+		Sama_3228	0.65	-2.4
3,821,563	+		Sama_3228	0.65	-0.5
3,821,563	+		Sama_3228	0.65	+1.5
3,821,563	+		Sama_3228	0.65	-0.3
3,821,563	+		Sama_3228	0.65	-1.1
3,821,563	+		Sama_3228	0.65	-1.3
3,821,563	+		Sama_3228	0.65	-1.9
3,821,564	-		Sama_3228	0.65	-1.6
3,821,564	-		Sama_3228	0.65	-1.9
3,821,564	-		Sama_3228	0.65	+0.9
3,821,564	-		Sama_3228	0.65	-0.9
3,821,564	-		Sama_3228	0.65	-2.3
3,821,638	+		Sama_3228	0.71	-1.4
3,821,638	+		Sama_3228	0.71	+0.1
3,821,639	-		Sama_3228	0.71	+0.0
3,821,757	+		Sama_3228	0.81	+2.1
3,821,758	+		Sama_3228	0.81	-1.7
3,821,758	+		Sama_3228	0.81	-0.9
3,821,758	+		Sama_3228	0.81	-1.7
3,821,759	-		Sama_3228	0.82	+1.3
3,821,759	-		Sama_3228	0.82	-2.7
3,821,777	+		Sama_3228	0.83	+0.6
3,821,777	+		Sama_3228	0.83	-0.4
3,821,777	+		Sama_3228	0.83	-1.9
3,821,777	+		Sama_3228	0.83	-2.6
3,821,778	-		Sama_3228	0.83	+0.4
3,821,778	-		Sama_3228	0.83	-0.9
3,821,783	+		Sama_3228	0.84	-0.1
3,821,792	+		Sama_3228	0.84	-1.9
3,821,792	+		Sama_3228	0.84	+1.3
3,821,792	+		Sama_3228	0.84	-1.6
3,821,792	+		Sama_3228	0.84	+1.7
3,821,793	-		Sama_3228	0.85	+2.7
3,821,793	-		Sama_3228	0.85	+0.6
3,821,793	-		Sama_3228	0.85	-0.7
3,821,861	+				+1.0
3,821,861	+				+0.8
3,821,861	+				-0.9
3,821,861	+				+4.6
3,821,861	+				+0.8
3,821,861	+				+0.3
3,821,861	+				-0.6
3,821,861	+				+0.3
3,821,862	-				-1.2
3,821,862	-				-2.7
3,821,862	-				+1.1
3,821,862	-				+1.4
3,821,862	-				+0.1
3,821,862	-				-1.3
3,821,863	+				+1.8
3,821,864	-				-0.1
3,821,864	-				-0.6
3,821,864	-				+0.1
3,821,864	-				-2.3
3,821,864	-				-2.2
3,821,864	-				-3.1
3,821,864	-				+2.3
3,821,865	+				+0.7
3,821,865	+				-0.0
3,821,865	+				+2.4
3,821,865	+				+3.2
3,821,865	+				-2.6
3,821,865	+				+0.3
3,821,865	+				-0.2
3,821,865	+				+1.3
3,821,865	+				-1.3
3,821,865	+				+0.4
3,821,866	-				+2.2
3,821,866	-				+0.0
3,821,866	-				+1.2
3,821,866	-				-1.7
3,821,866	-				+2.8
3,821,866	-				-0.9
3,821,866	-				-2.4
3,821,866	-				-1.1
3,821,905	+				-3.1
3,821,906	-				+0.7
3,821,960	+				-2.4
3,821,960	+				+0.4
3,821,960	+				+3.8
3,821,961	-				+0.9
3,821,961	-				+0.3
3,821,961	-				-1.5
3,821,961	-				+0.5
3,821,971	+				-0.1
3,821,971	+				-0.7
3,821,971	+				+1.1
3,821,972	-				+0.5
3,821,972	-				+1.3
3,822,064	+				+0.6
3,822,065	-				-0.7
3,822,065	-				-1.3
3,822,081	+				+0.8
3,822,081	+				+1.0
3,822,081	+				-0.3
3,822,082	-				+3.3
3,822,082	-				-3.2
3,822,082	-				-3.5
3,822,082	-				+0.5
3,822,082	-				-1.7
3,822,127	+				+0.9
3,822,128	-				-0.6
3,822,128	-				-2.3
3,822,128	-				+0.4
3,822,151	+				+0.3
3,822,151	+				+1.1
3,822,152	-				+2.4
3,822,152	-				+0.2
3,822,152	-				+3.9
3,822,182	+				+0.1
3,822,183	-				+1.7
3,822,193	+				+1.9
3,822,193	+				+2.7
3,822,194	-				-0.3
3,822,194	-				-1.4
3,822,194	-				-1.8
3,822,194	-				+0.6
3,822,221	-				-1.9
3,822,233	-				+3.0
3,822,234	+				-1.4
3,822,271	+				-1.7
3,822,272	-				+1.6
3,822,284	+				+0.3
3,822,326	+				+1.7
3,822,328	+				+0.7
3,822,328	+				+3.8
3,822,328	+				-1.3
3,822,328	+				+0.4
3,822,329	-				+2.0
3,822,329	-				-1.8
3,822,329	-				-3.4
3,822,392	+				-1.2
3,822,398	-				+1.8
3,822,417	+				-0.8
3,822,417	+				-0.0
3,822,418	-				-0.4
3,822,448	+				-0.8
3,822,612	+				-0.3
3,822,613	-				-0.3
3,822,614	+				+0.2
3,822,614	+				+1.4
3,822,614	+				-2.9
3,822,614	+				-1.1
3,822,614	+				+0.1
3,822,615	-				+2.9
3,822,615	-				-2.1
3,822,615	-				-1.3
3,822,646	+				+1.0
3,822,646	+				-2.2
3,822,646	+				-0.1
3,822,647	-				-0.8
3,822,647	-				+1.8
3,822,647	-				+0.6
3,822,686	-				-1.3
3,822,709	+				-1.6
3,822,709	+				+0.4
3,822,709	+				-3.1
3,822,710	-				-0.8
3,822,718	+				-1.0
3,822,719	-				-1.6
3,822,719	-				+0.9
3,822,719	-				-1.9
3,822,727	-				-1.3
3,822,744	+				-2.3
3,822,754	+				-1.9
3,822,929	-		Sama_3229	0.22	+0.4
3,822,929	-		Sama_3229	0.22	+2.0
3,822,954	+		Sama_3229	0.24	+0.0
3,822,954	+		Sama_3229	0.24	+0.9
3,822,955	-		Sama_3229	0.24	-2.2
3,822,958	+		Sama_3229	0.25	+0.5
3,822,959	-		Sama_3229	0.25	+1.0