Strain Fitness in Shewanella amazonensis SB2B around Sama_2947

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,501,942	+				+2.6
3,501,943	-				-1.6
3,502,000	+				+3.3
3,502,001	-				-0.2
3,502,001	-				+2.7
3,502,001	-				-1.1
3,502,052	+				+1.5
3,502,052	+				+1.2
3,502,052	+				-0.8
3,502,052	+				+0.2
3,502,053	-				-1.4
3,502,072	+				-2.5
3,502,072	+				-1.4
3,502,073	-				-0.1
3,502,073	-				-0.5
3,502,089	+				-1.8
3,502,139	+				-0.2
3,502,163	-				+2.0
3,502,189	+				+1.2
3,502,195	+				-0.7
3,502,195	+				-1.1
3,502,196	-				+0.0
3,502,196	-				-0.9
3,502,196	-				-0.5
3,502,196	-				-0.4
3,502,196	-				-3.0
3,502,199	+				+0.9
3,502,203	-				-1.4
3,502,203	-				+0.3
3,502,203	-				-0.0
3,502,208	-				-0.4
3,502,208	-				-0.8
3,502,213	-				+2.1
3,502,228	+				+1.3
3,502,319	+				+1.1
3,502,319	+				+0.4
3,502,320	-				+2.3
3,502,320	-				-1.6
3,502,324	-				-0.6
3,502,324	-				-1.8
3,502,347	-				+1.0
3,502,406	-				+1.9
3,502,453	+				-1.0
3,502,514	-		Sama_2946	0.20	+0.1
3,502,597	+		Sama_2946	0.39	-1.2
3,502,597	+		Sama_2946	0.39	+1.7
3,502,597	+		Sama_2946	0.39	+0.1
3,502,598	-		Sama_2946	0.39	+2.6
3,502,598	-		Sama_2946	0.39	-0.1
3,502,649	+		Sama_2946	0.51	-0.2
3,502,649	+		Sama_2946	0.51	-0.8
3,502,649	+		Sama_2946	0.51	-2.7
3,502,649	+		Sama_2946	0.51	+1.7
3,502,649	+		Sama_2946	0.51	-2.7
3,502,650	-		Sama_2946	0.51	-3.1
3,502,650	-		Sama_2946	0.51	-1.1
3,502,650	-		Sama_2946	0.51	-2.0
3,502,650	-		Sama_2946	0.51	-1.6
3,502,650	-		Sama_2946	0.51	+4.9
3,502,753	+		Sama_2946	0.75	-0.2
3,502,754	-		Sama_2946	0.75	+1.8
3,502,763	-		Sama_2946	0.77	-1.4
3,502,763	-		Sama_2946	0.77	+1.0
3,502,814	+		Sama_2946	0.89	+0.5
3,502,814	+		Sama_2946	0.89	-2.9
3,502,815	-		Sama_2946	0.89	-1.8
3,502,841	+				-2.5
3,502,841	+				-0.9
3,502,841	+				-2.8
3,502,857	+				+0.9
3,502,857	+				-1.4
3,502,857	+				-0.9
3,502,858	-				-0.1
3,502,860	+				-0.1
3,502,910	+				-0.8
3,502,976	+				+0.7
3,502,991	-				+0.4
3,502,995	+				-2.1
3,503,024	+				-0.2
3,503,024	+				-0.4
3,503,024	+				-2.3
3,503,024	+				+1.7
3,503,024	+				+2.2
3,503,024	+				+3.1
3,503,025	-				+0.8
3,503,025	-				-2.0
3,503,025	-				-0.4
3,503,076	-		Sama_2947	0.13	+0.9
3,503,090	+		Sama_2947	0.14	-1.2
3,503,090	+		Sama_2947	0.14	+1.1
3,503,090	+		Sama_2947	0.14	-0.2
3,503,091	-		Sama_2947	0.14	+2.7
3,503,091	-		Sama_2947	0.14	-2.7
3,503,130	+		Sama_2947	0.17	+1.3
3,503,131	-		Sama_2947	0.17	-0.3
3,503,190	+		Sama_2947	0.21	-1.2
3,503,191	-		Sama_2947	0.21	-0.7
3,503,306	+		Sama_2947	0.29	-0.3
3,503,306	+		Sama_2947	0.29	-0.1
3,503,306	+		Sama_2947	0.29	-1.8
3,503,362	+		Sama_2947	0.32	+1.0
3,503,362	+		Sama_2947	0.32	-0.9
3,503,363	-		Sama_2947	0.32	-2.7
3,503,363	-		Sama_2947	0.32	-0.0
3,503,363	-		Sama_2947	0.32	-2.4
3,503,363	-		Sama_2947	0.32	-2.4
3,503,363	-		Sama_2947	0.32	-0.6
3,503,363	-		Sama_2947	0.32	-0.4
3,503,363	-		Sama_2947	0.32	-0.4
3,503,363	-		Sama_2947	0.32	-0.7
3,503,391	+		Sama_2947	0.34	+0.6
3,503,418	+		Sama_2947	0.36	-0.8
3,503,491	+		Sama_2947	0.41	-1.7
3,503,492	-		Sama_2947	0.41	+0.6
3,503,492	-		Sama_2947	0.41	-2.3
3,503,593	+		Sama_2947	0.48	-1.4
3,503,594	-		Sama_2947	0.48	-0.4
3,503,768	+		Sama_2947	0.59	-1.3
3,503,768	+		Sama_2947	0.59	+0.9
3,503,768	+		Sama_2947	0.59	-0.5
3,503,768	+		Sama_2947	0.59	+1.2
3,503,768	+		Sama_2947	0.59	-0.7
3,503,769	-		Sama_2947	0.59	-2.0
3,503,769	-		Sama_2947	0.59	-1.5
3,503,769	-		Sama_2947	0.59	-1.2
3,503,769	-		Sama_2947	0.59	+0.7
3,503,769	-		Sama_2947	0.59	+5.0
3,503,769	-		Sama_2947	0.59	-1.2
3,503,809	-		Sama_2947	0.62	-0.4
3,503,809	-		Sama_2947	0.62	+1.3
3,503,863	+		Sama_2947	0.66	+0.5
3,503,864	-		Sama_2947	0.66	+0.4
3,503,995	+		Sama_2947	0.74	+0.3
3,503,995	+		Sama_2947	0.74	-2.2
3,503,995	+		Sama_2947	0.74	+1.2
3,503,995	+		Sama_2947	0.74	-3.6
3,503,996	-		Sama_2947	0.75	-0.5
3,504,001	+		Sama_2947	0.75	-0.8
3,504,001	+		Sama_2947	0.75	-0.4
3,504,001	+		Sama_2947	0.75	-0.4
3,504,001	+		Sama_2947	0.75	-1.2
3,504,001	+		Sama_2947	0.75	-2.0
3,504,001	+		Sama_2947	0.75	+0.9
3,504,001	+		Sama_2947	0.75	-3.3
3,504,001	+		Sama_2947	0.75	+0.7
3,504,002	-		Sama_2947	0.75	-0.8
3,504,002	-		Sama_2947	0.75	-4.0
3,504,002	-		Sama_2947	0.75	-2.5
3,504,002	-		Sama_2947	0.75	+1.6
3,504,019	-		Sama_2947	0.76	-0.2
3,504,036	+		Sama_2947	0.77	-1.8
3,504,037	-		Sama_2947	0.77	+0.9
3,504,104	+		Sama_2947	0.82	-0.3
3,504,104	+		Sama_2947	0.82	+1.7
3,504,104	+		Sama_2947	0.82	+0.8
3,504,104	+		Sama_2947	0.82	-0.0
3,504,104	+		Sama_2947	0.82	-1.8
3,504,104	+		Sama_2947	0.82	+0.8
3,504,104	+		Sama_2947	0.82	+0.3
3,504,104	+		Sama_2947	0.82	+0.8
3,504,104	+		Sama_2947	0.82	-0.3
3,504,104	+		Sama_2947	0.82	-1.8
3,504,104	+		Sama_2947	0.82	-0.4
3,504,104	+		Sama_2947	0.82	+0.7
3,504,104	+		Sama_2947	0.82	-0.2
3,504,104	+		Sama_2947	0.82	-0.0
3,504,104	+		Sama_2947	0.82	-2.0
3,504,104	+		Sama_2947	0.82	-0.4
3,504,104	+		Sama_2947	0.82	+0.9
3,504,104	+		Sama_2947	0.82	-2.0
3,504,104	+		Sama_2947	0.82	-0.6
3,504,104	+		Sama_2947	0.82	+1.5
3,504,104	+		Sama_2947	0.82	-3.0
3,504,104	+		Sama_2947	0.82	+1.2
3,504,104	+		Sama_2947	0.82	-0.4
3,504,104	+		Sama_2947	0.82	-0.5
3,504,104	+		Sama_2947	0.82	-1.6
3,504,104	+		Sama_2947	0.82	-2.5
3,504,104	+		Sama_2947	0.82	-1.1
3,504,105	-		Sama_2947	0.82	+1.3
3,504,105	-		Sama_2947	0.82	+0.9
3,504,105	-		Sama_2947	0.82	-1.4
3,504,105	-		Sama_2947	0.82	-1.1
3,504,105	-		Sama_2947	0.82	-1.8
3,504,105	-		Sama_2947	0.82	-2.3
3,504,105	-		Sama_2947	0.82	-1.0
3,504,105	-		Sama_2947	0.82	-2.5
3,504,105	-		Sama_2947	0.82	-1.7
3,504,105	-		Sama_2947	0.82	-2.8
3,504,105	-		Sama_2947	0.82	-0.6
3,504,105	-		Sama_2947	0.82	-2.0
3,504,105	-		Sama_2947	0.82	-0.8
3,504,105	-		Sama_2947	0.82	-1.2
3,504,105	-		Sama_2947	0.82	-0.7
3,504,108	+		Sama_2947	0.82	+0.7
3,504,109	-		Sama_2947	0.82	-0.3
3,504,200	+		Sama_2947	0.88	-2.6
3,504,200	+		Sama_2947	0.88	-2.6
3,504,200	+		Sama_2947	0.88	-0.4
3,504,243	+				-0.2
3,504,243	+				+0.4
3,504,243	+				-2.3
3,504,244	-				-3.5
3,504,344	+				+0.7
3,504,344	+				-0.6
3,504,421	+				+2.3
3,504,422	-				+1.2
3,504,589	+		Sama_2948	0.14	-0.8
3,504,590	-		Sama_2948	0.14	+1.5
3,504,590	-		Sama_2948	0.14	-2.3
3,504,671	-		Sama_2948	0.27	+2.2
3,504,725	+		Sama_2948	0.35	+1.7
3,504,725	+		Sama_2948	0.35	-1.8
3,504,725	+		Sama_2948	0.35	+1.9
3,504,725	+		Sama_2948	0.35	+1.2
3,504,726	-		Sama_2948	0.35	+0.2
3,504,726	-		Sama_2948	0.35	-0.8
3,504,726	-		Sama_2948	0.35	-0.8
3,504,726	-		Sama_2948	0.35	+0.8
3,504,726	-		Sama_2948	0.35	-0.9
3,504,726	-		Sama_2948	0.35	+1.3
3,504,726	-		Sama_2948	0.35	-2.3
3,504,726	-		Sama_2948	0.35	-2.0
3,504,748	+		Sama_2948	0.38	+0.7
3,504,748	+		Sama_2948	0.38	+4.2
3,504,748	+		Sama_2948	0.38	+0.1
3,504,748	+		Sama_2948	0.38	+0.9
3,504,749	-		Sama_2948	0.38	-0.5
3,504,749	-		Sama_2948	0.38	-2.3
3,504,979	+		Sama_2948	0.73	+0.6
3,504,980	-		Sama_2948	0.73	+1.1
3,505,014	+		Sama_2948	0.78	-1.6
3,505,015	-		Sama_2948	0.78	-1.4
3,505,034	-		Sama_2948	0.81	+1.6
3,505,062	-		Sama_2948	0.85	+0.4
3,505,077	-		Sama_2948	0.88	-2.3
3,505,077	-		Sama_2948	0.88	+0.6
3,505,153	+				+0.7
3,505,154	-				+3.3
3,505,262	-				-0.7
3,505,262	-				+0.2
3,505,264	-				-0.1
3,505,264	-				+0.1
3,505,279	-				-1.4
3,505,313	+				-2.0
3,505,313	+				-0.1
3,505,315	+				-0.8
3,505,320	+				+0.6
3,505,372	+				-1.9
3,505,373	-				-0.2
3,505,373	-				+1.2
3,505,378	-				+0.2