Strain Fitness in Shewanella amazonensis SB2B around Sama_2922

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,473,839	+		Sama_2921	0.38	-2.6
3,473,885	-		Sama_2921	0.41	-0.4
3,473,918	-		Sama_2921	0.43	+1.1
3,473,918	-		Sama_2921	0.43	+1.5
3,473,947	+		Sama_2921	0.46	-0.9
3,473,947	+		Sama_2921	0.46	+1.5
3,473,947	+		Sama_2921	0.46	-1.7
3,473,947	+		Sama_2921	0.46	-0.3
3,473,948	-		Sama_2921	0.46	+3.2
3,473,948	-		Sama_2921	0.46	+3.5
3,473,979	+		Sama_2921	0.48	-0.9
3,474,026	+		Sama_2921	0.51	+0.9
3,474,026	+		Sama_2921	0.51	+1.5
3,474,026	+		Sama_2921	0.51	-1.2
3,474,026	+		Sama_2921	0.51	-0.4
3,474,027	-		Sama_2921	0.51	-0.5
3,474,027	-		Sama_2921	0.51	+0.4
3,474,044	+		Sama_2921	0.53	+0.9
3,474,045	-		Sama_2921	0.53	+2.3
3,474,072	-		Sama_2921	0.55	+1.1
3,474,096	-		Sama_2921	0.56	+0.0
3,474,096	-		Sama_2921	0.56	-1.7
3,474,096	-		Sama_2921	0.56	+2.6
3,474,123	+		Sama_2921	0.58	+1.1
3,474,124	-		Sama_2921	0.59	+0.0
3,474,126	+		Sama_2921	0.59	-1.2
3,474,126	+		Sama_2921	0.59	+1.0
3,474,126	+		Sama_2921	0.59	+0.5
3,474,127	-		Sama_2921	0.59	+1.1
3,474,127	-		Sama_2921	0.59	-1.1
3,474,127	-		Sama_2921	0.59	+0.7
3,474,127	-		Sama_2921	0.59	+2.3
3,474,199	+		Sama_2921	0.64	+0.6
3,474,200	-		Sama_2921	0.64	-0.9
3,474,200	-		Sama_2921	0.64	+0.2
3,474,200	-		Sama_2921	0.64	-0.9
3,474,259	-		Sama_2921	0.69	+0.5
3,474,305	+		Sama_2921	0.72	-1.4
3,474,305	+		Sama_2921	0.72	+0.7
3,474,306	-		Sama_2921	0.72	-2.4
3,474,306	-		Sama_2921	0.72	-2.3
3,474,306	-		Sama_2921	0.72	-0.9
3,474,306	-		Sama_2921	0.72	-1.7
3,474,430	-		Sama_2921	0.81	+1.1
3,474,430	-		Sama_2921	0.81	+0.5
3,474,465	-		Sama_2921	0.84	-0.2
3,474,465	-		Sama_2921	0.84	-0.9
3,474,465	-		Sama_2921	0.84	-0.6
3,474,465	-		Sama_2921	0.84	+1.3
3,474,465	-		Sama_2921	0.84	+0.5
3,474,465	-		Sama_2921	0.84	+0.2
3,474,465	-		Sama_2921	0.84	-0.5
3,474,466	+		Sama_2921	0.84	+2.7
3,474,466	+		Sama_2921	0.84	-0.4
3,474,467	-		Sama_2921	0.84	-3.0
3,474,485	-		Sama_2921	0.85	-0.4
3,474,485	-		Sama_2921	0.85	-2.3
3,474,485	-		Sama_2921	0.85	-2.9
3,474,533	-		Sama_2921	0.89	-1.9
3,474,613	+				-1.2
3,474,613	+				+1.7
3,474,613	+				-0.2
3,474,614	-				+0.1
3,474,659	+				+1.0
3,474,659	+				+0.4
3,474,659	+				+1.7
3,474,659	+				-0.4
3,474,659	+				+0.8
3,474,659	+				-2.3
3,474,660	-				+5.4
3,474,660	-				+0.2
3,474,660	-				-0.5
3,474,660	-				-0.9
3,474,660	-				-0.6
3,474,680	-				-2.3
3,474,680	-				+2.6
3,474,703	+				-1.2
3,474,715	+				+0.4
3,474,716	-				+1.7
3,474,716	-				+0.2
3,474,732	+				-0.7
3,474,733	-				+0.6
3,474,733	-				-2.3
3,474,781	+				-0.9
3,474,781	+				-1.2
3,474,781	+				-0.9
3,474,781	+				+1.1
3,474,782	-				+0.8
3,474,782	-				+0.6
3,474,836	+				+1.3
3,474,836	+				+2.6
3,474,845	-				+1.9
3,474,871	+				-2.3
3,474,871	+				+0.7
3,474,886	+				+0.6
3,474,967	-				-0.1
3,475,034	+		Sama_2922	0.11	-2.0
3,475,035	-		Sama_2922	0.11	-1.6
3,475,053	+		Sama_2922	0.11	-1.4
3,475,053	+		Sama_2922	0.11	+1.4
3,475,054	-		Sama_2922	0.11	-0.0
3,475,054	-		Sama_2922	0.11	-1.9
3,475,142	+		Sama_2922	0.16	+0.5
3,475,143	-		Sama_2922	0.16	+0.1
3,475,165	-		Sama_2922	0.17	-2.7
3,475,165	-		Sama_2922	0.17	+1.6
3,475,165	-		Sama_2922	0.17	-0.4
3,475,165	-		Sama_2922	0.17	+2.6
3,475,167	+		Sama_2922	0.17	+0.1
3,475,200	-		Sama_2922	0.18	+1.7
3,475,205	-		Sama_2922	0.19	-2.6
3,475,266	+		Sama_2922	0.21	+0.4
3,475,267	-		Sama_2922	0.21	+0.6
3,475,275	+		Sama_2922	0.22	+3.1
3,475,276	-		Sama_2922	0.22	-1.2
3,475,284	+		Sama_2922	0.22	-0.9
3,475,284	+		Sama_2922	0.22	+2.4
3,475,287	+		Sama_2922	0.22	-0.7
3,475,300	-		Sama_2922	0.23	+0.9
3,475,300	-		Sama_2922	0.23	+0.1
3,475,300	-		Sama_2922	0.23	-2.7
3,475,311	-		Sama_2922	0.23	-0.4
3,475,311	-		Sama_2922	0.23	+0.6
3,475,317	+		Sama_2922	0.24	-2.2
3,475,380	-		Sama_2922	0.27	-1.9
3,475,458	+		Sama_2922	0.30	+1.6
3,475,485	-		Sama_2922	0.32	-1.2
3,475,498	-		Sama_2922	0.32	-0.9
3,475,536	-		Sama_2922	0.34	-0.2
3,475,635	+		Sama_2922	0.39	+1.5
3,475,739	-		Sama_2922	0.43	-3.1
3,475,833	-		Sama_2922	0.48	-1.2
3,475,919	-		Sama_2922	0.52	-0.7
3,475,946	-		Sama_2922	0.53	+0.7
3,475,985	-		Sama_2922	0.55	-0.2
3,475,987	-		Sama_2922	0.55	+0.3
3,476,094	-		Sama_2922	0.60	-2.3
3,476,094	-		Sama_2922	0.60	-0.4
3,476,100	+		Sama_2922	0.60	-1.0
3,476,100	+		Sama_2922	0.60	-1.2
3,476,109	-		Sama_2922	0.61	-2.4
3,476,109	-		Sama_2922	0.61	-0.1
3,476,241	-		Sama_2922	0.67	+1.1
3,476,241	-		Sama_2922	0.67	-2.2
3,476,249	-		Sama_2922	0.67	+1.4
3,476,281	-		Sama_2922	0.69	+0.5
3,476,297	-		Sama_2922	0.69	-0.4
3,476,300	+		Sama_2922	0.70	+0.6
3,476,301	-		Sama_2922	0.70	-2.8
3,476,301	-		Sama_2922	0.70	-1.4
3,476,400	-		Sama_2922	0.74	-2.8
3,476,410	-		Sama_2922	0.75	+0.1
3,476,424	+		Sama_2922	0.75	-2.2
3,476,440	-		Sama_2922	0.76	-0.4
3,476,472	+		Sama_2922	0.78	-0.4
3,476,543	+		Sama_2922	0.81	-1.7
3,476,543	+		Sama_2922	0.81	-3.4
3,476,636	+		Sama_2922	0.85	-1.3
3,476,637	-		Sama_2922	0.85	-2.9
3,476,651	+		Sama_2922	0.86	-1.4
3,476,651	+		Sama_2922	0.86	+0.0
3,476,652	-		Sama_2922	0.86	+0.9
3,476,655	-		Sama_2922	0.86	-3.1
3,476,655	-		Sama_2922	0.86	+4.3
3,476,691	+		Sama_2922	0.88	-0.4
3,476,691	+		Sama_2922	0.88	+0.3
3,476,692	-		Sama_2922	0.88	-2.2
3,476,733	+		Sama_2922	0.90	+1.2
3,476,733	+		Sama_2922	0.90	-1.4
3,476,734	-		Sama_2922	0.90	-1.2
3,476,782	-				-0.9
3,476,784	-				-1.2
3,476,784	-				+1.6
3,476,817	+				-2.0
3,476,868	+				-0.6
3,476,869	-				+0.2
3,476,869	-				-1.2
3,476,895	+				+0.9
3,476,896	-				-1.2
3,476,896	-				-0.4
3,476,898	+				-1.9
3,476,898	+				-2.7
3,476,899	-				+2.1
3,476,899	-				-1.2
3,476,924	+				+2.1
3,476,925	-				-1.2
3,476,925	-				+3.4
3,476,925	-				-3.3
3,476,928	-				-2.3
3,476,928	-				-1.4
3,476,939	+				-0.9
3,476,940	-				-0.9
3,476,944	+				-1.9
3,476,944	+				+0.8
3,476,944	+				+0.4
3,476,945	-				+0.8
3,476,945	-				+2.4
3,476,945	-				+3.3
3,476,956	+				-0.4
3,476,957	-				-1.2
3,476,960	+				+1.2
3,476,960	+				-2.2
3,476,961	-				-2.2
3,476,961	-				+0.1
3,476,975	-				+0.8
3,476,984	+				+1.6
3,476,994	+				+1.7
3,476,995	-				+0.1
3,477,017	+				-0.9
3,477,018	-				+1.6
3,477,018	-				+2.1
3,477,018	-				-0.9
3,477,026	+				-3.6
3,477,026	+				+0.7
3,477,027	-				+1.0
3,477,029	-				-0.5
3,477,029	-				+2.6
3,477,045	+				-0.6
3,477,053	+				+0.2
3,477,054	-				-2.4
3,477,063	-				-1.8
3,477,120	-				+0.1
3,477,120	-				+0.8
3,477,162	+				-2.7
3,477,217	-				+2.1
3,477,248	+				+1.8
3,477,248	+				+1.4
3,477,248	+				+1.0
3,477,248	+				-0.1
3,477,248	+				-0.2
3,477,248	+				+3.7
3,477,248	+				-1.7
3,477,248	+				-1.9
3,477,249	-				-0.4
3,477,249	-				+0.3
3,477,249	-				+0.0
3,477,249	-				-0.6
3,477,249	-				+1.3
3,477,249	-				+2.0
3,477,249	-				+2.3
3,477,249	-				-1.9
3,477,249	-				-0.1
3,477,292	-				+2.1
3,477,331	+				+0.4
3,477,331	+				-0.0
3,477,332	-				-0.7
3,477,332	-				-0.7
3,477,461	+				-1.8
3,477,461	+				-2.2
3,477,461	+				-1.2
3,477,526	+				-0.3
3,477,549	-				+1.1
3,477,549	-				+1.7
3,477,575	+				+2.1
3,477,575	+				-0.4
3,477,576	-				-0.8
3,477,576	-				+2.9
3,477,576	-				+1.6
3,477,576	-				-1.7
3,477,576	-				-1.3
3,477,588	+				-0.0
3,477,588	+				+0.1
3,477,589	-				+0.1
3,477,605	+				+0.8
3,477,616	+				+3.6
3,477,616	+				+0.1
3,477,618	+				+2.0
3,477,618	+				-1.3
3,477,618	+				+1.9
3,477,618	+				-0.4
3,477,618	+				-2.3
3,477,619	-				+1.2
3,477,619	-				-0.5
3,477,619	-				+1.2
3,477,619	-				+0.6
3,477,627	+				-0.4
3,477,627	+				+0.4
3,477,628	-				-4.2
3,477,628	-				-0.3
3,477,628	-				-2.2
3,477,628	-				-1.2
3,477,631	+				-1.4
3,477,675	-				-0.6
3,477,675	-				-0.9
3,477,741	+		Sama_2923	0.20	-1.0
3,477,741	+		Sama_2923	0.20	-1.4
3,477,741	+		Sama_2923	0.20	-0.2
3,477,741	+		Sama_2923	0.20	-1.2
3,477,741	+		Sama_2923	0.20	-2.0
3,477,742	-		Sama_2923	0.20	-1.7
3,477,742	-		Sama_2923	0.20	-1.8
3,477,742	-		Sama_2923	0.20	-1.7
3,477,742	-		Sama_2923	0.20	-0.0
3,477,742	-		Sama_2923	0.20	-0.4
3,477,744	+		Sama_2923	0.21	-0.4
3,477,745	-		Sama_2923	0.21	-0.4
3,477,745	-		Sama_2923	0.21	-1.4
3,477,755	+		Sama_2923	0.23	-1.9
3,477,783	+		Sama_2923	0.28	-1.7
3,477,783	+		Sama_2923	0.28	-0.0
3,477,783	+		Sama_2923	0.28	+0.8
3,477,783	+		Sama_2923	0.28	+2.1
3,477,783	+		Sama_2923	0.28	+1.6
3,477,783	+		Sama_2923	0.28	+3.0
3,477,783	+		Sama_2923	0.28	-0.7
3,477,784	-		Sama_2923	0.28	+1.8
3,477,784	-		Sama_2923	0.28	-0.9
3,477,784	-		Sama_2923	0.28	-0.4
3,477,784	-		Sama_2923	0.28	-1.7
3,477,784	-		Sama_2923	0.28	+0.7
3,477,786	+		Sama_2923	0.28	-1.4
3,477,786	+		Sama_2923	0.28	+2.3
3,477,786	+		Sama_2923	0.28	-1.9
3,477,787	-		Sama_2923	0.28	+1.7
3,477,787	-		Sama_2923	0.28	-1.1
3,477,799	+		Sama_2923	0.31	-0.0
3,477,881	+		Sama_2923	0.45	-1.7
3,477,881	+		Sama_2923	0.45	-0.7
3,477,881	+		Sama_2923	0.45	-2.9
3,477,881	+		Sama_2923	0.45	-1.7
3,477,881	+		Sama_2923	0.45	+0.7
3,477,882	-		Sama_2923	0.45	-2.7
3,477,882	-		Sama_2923	0.45	-1.1
3,477,882	-		Sama_2923	0.45	+0.4
3,477,882	-		Sama_2923	0.45	-0.9
3,477,882	-		Sama_2923	0.45	+1.9
3,477,882	-		Sama_2923	0.45	+1.5
3,477,933	+		Sama_2923	0.54	-0.4
3,477,933	+		Sama_2923	0.54	-1.9
3,477,933	+		Sama_2923	0.54	-0.4
3,477,933	+		Sama_2923	0.54	+1.9
3,477,933	+		Sama_2923	0.54	+1.0
3,477,933	+		Sama_2923	0.54	+1.1
3,477,933	+		Sama_2923	0.54	+0.7
3,477,933	+		Sama_2923	0.54	-0.9
3,477,933	+		Sama_2923	0.54	+1.9
3,477,933	+		Sama_2923	0.54	+0.1
3,477,933	+		Sama_2923	0.54	-0.4
3,477,933	+		Sama_2923	0.54	-1.7
3,477,933	+		Sama_2923	0.54	-2.4
3,477,933	+		Sama_2923	0.54	+0.4
3,477,933	+		Sama_2923	0.54	-2.0
3,477,934	-		Sama_2923	0.54	+1.1
3,477,934	-		Sama_2923	0.54	-0.4
3,477,934	-		Sama_2923	0.54	-0.2
3,477,934	-		Sama_2923	0.54	-1.2
3,477,934	-		Sama_2923	0.54	-0.4
3,477,934	-		Sama_2923	0.54	-1.9
3,477,934	-		Sama_2923	0.54	+0.7
3,477,934	-		Sama_2923	0.54	-2.4
3,477,934	-		Sama_2923	0.54	+1.7
3,477,934	-		Sama_2923	0.54	+0.0
3,477,934	-		Sama_2923	0.54	-2.4
3,477,934	-		Sama_2923	0.54	+0.8
3,477,934	-		Sama_2923	0.54	+0.8