Strain Fitness in Shewanella amazonensis SB2B around Sama_2702

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,232,058	+		Sama_2700	0.89	+0.1
3,232,058	+		Sama_2700	0.89	+0.1
3,232,108	+				-1.2
3,232,108	+				+0.4
3,232,109	-				-1.8
3,232,193	+				+3.0
3,232,194	-				-1.7
3,232,194	-				+0.4
3,232,194	-				-0.9
3,232,200	+				+1.0
3,232,200	+				-0.5
3,232,200	+				+0.4
3,232,200	+				-1.5
3,232,200	+				+4.0
3,232,201	-				-2.4
3,232,201	-				+0.1
3,232,201	-				+0.8
3,232,201	-				+0.6
3,232,249	-				-1.0
3,232,276	+				-1.7
3,232,281	+				-2.7
3,232,282	-				+3.3
3,232,282	-				-0.1
3,232,282	-				-2.2
3,232,282	-				+2.1
3,232,282	-				+0.7
3,232,282	-				+0.4
3,232,312	+				+0.6
3,232,312	+				-1.1
3,232,312	+				-1.8
3,232,313	-				+0.2
3,232,313	-				+2.9
3,232,313	-				+0.6
3,232,350	+				+2.4
3,232,351	-				-1.7
3,232,351	-				+1.6
3,232,360	-				+2.0
3,232,360	-				+0.5
3,232,419	+		Sama_2701	0.19	-1.7
3,232,420	-		Sama_2701	0.19	-2.4
3,232,514	+		Sama_2701	0.36	-0.8
3,232,514	+		Sama_2701	0.36	-1.0
3,232,515	-		Sama_2701	0.36	+0.1
3,232,515	-		Sama_2701	0.36	-1.9
3,232,555	+		Sama_2701	0.43	+0.1
3,232,555	+		Sama_2701	0.43	+1.7
3,232,556	-		Sama_2701	0.43	+0.9
3,232,686	-		Sama_2701	0.66	-1.2
3,232,686	-		Sama_2701	0.66	-0.5
3,232,724	+		Sama_2701	0.73	-0.2
3,232,725	-		Sama_2701	0.73	+0.1
3,232,727	-		Sama_2701	0.73	+0.1
3,232,727	-		Sama_2701	0.73	+2.4
3,232,800	-		Sama_2701	0.86	-1.6
3,232,802	+		Sama_2701	0.87	+0.3
3,232,864	-				-2.6
3,232,864	-				-1.1
3,232,874	+				-1.2
3,232,883	+				-1.0
3,232,883	+				-3.5
3,232,883	+				-0.0
3,232,883	+				-1.5
3,232,883	+				-1.2
3,232,883	+				-0.0
3,232,884	-				-0.2
3,232,884	-				+0.4
3,232,900	+				+0.1
3,232,900	+				+1.1
3,232,901	-				-1.8
3,232,938	-				-0.5
3,232,967	+				+0.1
3,232,967	+				-2.2
3,232,967	+				+0.6
3,232,968	-				-3.2
3,232,968	-				-2.5
3,232,968	-				+0.7
3,232,968	-				-0.5
3,232,969	+				+0.5
3,232,970	-				+0.1
3,232,985	-				-0.2
3,233,013	-				-2.5
3,233,020	+				-3.3
3,233,021	-				+1.5
3,233,043	+				-0.6
3,233,043	+				+1.2
3,233,044	-				+2.9
3,233,044	-				+1.6
3,233,069	-				-2.9
3,233,069	-				+1.2
3,233,069	-				+0.5
3,233,078	-				+2.0
3,233,078	-				-1.8
3,233,085	+				+1.0
3,233,085	+				-0.1
3,233,085	+				-1.3
3,233,085	+				+1.2
3,233,085	+				-0.7
3,233,085	+				+2.3
3,233,085	+				-2.4
3,233,085	+				-1.5
3,233,086	-				-0.4
3,233,086	-				-0.2
3,233,086	-				-0.1
3,233,086	-				+1.1
3,233,086	-				+1.4
3,233,092	-				-1.2
3,233,092	-				-2.5
3,233,105	-				+0.1
3,233,105	-				-1.5
3,233,105	-				-0.5
3,233,136	+				+3.0
3,233,170	+		Sama_2702	0.11	+0.1
3,233,170	+		Sama_2702	0.11	-2.2
3,233,170	+		Sama_2702	0.11	-0.5
3,233,171	-		Sama_2702	0.11	-1.7
3,233,191	+		Sama_2702	0.13	-0.5
3,233,202	+		Sama_2702	0.14	+0.8
3,233,202	+		Sama_2702	0.14	-0.5
3,233,203	-		Sama_2702	0.14	-1.5
3,233,203	-		Sama_2702	0.14	+0.7
3,233,203	-		Sama_2702	0.14	-2.9
3,233,204	+		Sama_2702	0.14	+0.4
3,233,204	+		Sama_2702	0.14	-1.2
3,233,204	+		Sama_2702	0.14	-1.0
3,233,205	-		Sama_2702	0.14	-0.8
3,233,205	-		Sama_2702	0.14	-1.7
3,233,205	-		Sama_2702	0.14	-1.0
3,233,205	-		Sama_2702	0.14	+1.7
3,233,205	-		Sama_2702	0.14	-3.0
3,233,205	-		Sama_2702	0.14	-0.1
3,233,205	-		Sama_2702	0.14	-2.1
3,233,208	+		Sama_2702	0.15	+1.2
3,233,208	+		Sama_2702	0.15	-0.7
3,233,209	-		Sama_2702	0.15	+0.5
3,233,209	-		Sama_2702	0.15	-1.9
3,233,209	-		Sama_2702	0.15	+0.4
3,233,213	-		Sama_2702	0.15	+0.8
3,233,237	+		Sama_2702	0.17	-0.7
3,233,248	-		Sama_2702	0.18	-0.9
3,233,320	+		Sama_2702	0.25	+1.3
3,233,320	+		Sama_2702	0.25	-0.6
3,233,320	+		Sama_2702	0.25	+1.0
3,233,320	+		Sama_2702	0.25	+1.4
3,233,320	+		Sama_2702	0.25	+4.0
3,233,320	+		Sama_2702	0.25	-1.2
3,233,320	+		Sama_2702	0.25	-0.2
3,233,320	+		Sama_2702	0.25	+0.1
3,233,320	+		Sama_2702	0.25	+2.2
3,233,321	-		Sama_2702	0.25	-2.2
3,233,321	-		Sama_2702	0.25	-0.9
3,233,321	-		Sama_2702	0.25	+0.5
3,233,321	-		Sama_2702	0.25	+1.8
3,233,321	-		Sama_2702	0.25	+1.6
3,233,321	-		Sama_2702	0.25	+1.2
3,233,321	-		Sama_2702	0.25	-0.5
3,233,324	+		Sama_2702	0.25	-2.4
3,233,324	+		Sama_2702	0.25	-3.0
3,233,325	-		Sama_2702	0.25	-2.2
3,233,325	-		Sama_2702	0.25	+0.6
3,233,325	-		Sama_2702	0.25	-1.9
3,233,325	-		Sama_2702	0.25	-1.3
3,233,347	+		Sama_2702	0.27	-1.5
3,233,348	-		Sama_2702	0.27	-1.5
3,233,348	-		Sama_2702	0.27	+1.6
3,233,393	-		Sama_2702	0.31	-1.9
3,233,426	+		Sama_2702	0.34	+0.5
3,233,427	-		Sama_2702	0.34	-0.3
3,233,438	+		Sama_2702	0.35	+1.2
3,233,438	+		Sama_2702	0.35	-0.6
3,233,439	-		Sama_2702	0.35	-2.7
3,233,439	-		Sama_2702	0.35	+1.4
3,233,484	+		Sama_2702	0.39	-2.1
3,233,485	-		Sama_2702	0.39	+0.6
3,233,485	-		Sama_2702	0.39	-1.0
3,233,485	-		Sama_2702	0.39	+1.2
3,233,498	-		Sama_2702	0.40	-1.7
3,233,638	+		Sama_2702	0.53	-0.3
3,233,638	+		Sama_2702	0.53	-1.6
3,233,639	-		Sama_2702	0.53	+1.5
3,233,657	+		Sama_2702	0.55	-0.4
3,233,658	-		Sama_2702	0.55	+1.1
3,233,673	+		Sama_2702	0.56	+1.4
3,233,673	+		Sama_2702	0.56	-0.1
3,233,673	+		Sama_2702	0.56	-1.2
3,233,674	-		Sama_2702	0.56	+0.1
3,233,703	-		Sama_2702	0.59	-0.4
3,233,703	-		Sama_2702	0.59	-4.4
3,233,703	-		Sama_2702	0.59	+1.1
3,233,723	-		Sama_2702	0.60	-1.2
3,233,748	-		Sama_2702	0.63	+1.1
3,233,761	+		Sama_2702	0.64	+0.4
3,233,762	-		Sama_2702	0.64	+1.5
3,233,769	+		Sama_2702	0.65	+5.6
3,233,769	+		Sama_2702	0.65	+1.9
3,233,846	+		Sama_2702	0.71	-0.1
3,233,847	-		Sama_2702	0.71	-1.5
3,233,875	+		Sama_2702	0.74	-0.5
3,233,876	-		Sama_2702	0.74	+0.4
3,233,876	-		Sama_2702	0.74	+0.1
3,234,027	+		Sama_2702	0.88	-1.2
3,234,027	+		Sama_2702	0.88	-0.7
3,234,027	+		Sama_2702	0.88	-0.0
3,234,027	+		Sama_2702	0.88	-2.1
3,234,027	+		Sama_2702	0.88	-1.2
3,234,028	-		Sama_2702	0.88	-1.0
3,234,028	-		Sama_2702	0.88	+0.2
3,234,028	-		Sama_2702	0.88	+0.8
3,234,046	+		Sama_2702	0.89	-2.1
3,234,046	+		Sama_2702	0.89	+2.0
3,234,046	+		Sama_2702	0.89	+1.1
3,234,047	-		Sama_2702	0.89	+1.5
3,234,113	-				+0.3
3,234,138	-				-0.9
3,234,138	-				-0.9
3,234,148	+				-0.5
3,234,148	+				-1.9
3,234,148	+				-0.9
3,234,148	+				-0.7
3,234,148	+				-0.5
3,234,148	+				+1.1
3,234,166	+				-1.2
3,234,166	+				+1.9
3,234,167	-				-1.7
3,234,167	-				+1.1
3,234,174	-				+0.5
3,234,213	-				-2.5
3,234,272	-				-1.2
3,234,295	+				-0.3
3,234,401	-		Sama_2703	0.17	+1.1
3,234,401	-		Sama_2703	0.17	+1.4
3,234,413	+		Sama_2703	0.19	-1.4
3,234,455	+		Sama_2703	0.24	+1.1
3,234,456	-		Sama_2703	0.24	-3.3
3,234,456	-		Sama_2703	0.24	+0.9
3,234,478	-		Sama_2703	0.26	-2.7
3,234,575	+		Sama_2703	0.38	-1.1
3,234,575	+		Sama_2703	0.38	-2.4
3,234,575	+		Sama_2703	0.38	+0.9
3,234,576	-		Sama_2703	0.38	-0.6
3,234,597	-		Sama_2703	0.40	+1.6
3,234,717	-		Sama_2703	0.54	+0.4
3,234,782	+		Sama_2703	0.62	+1.1
3,234,783	-		Sama_2703	0.62	+2.1
3,234,839	+		Sama_2703	0.68	-0.4
3,234,839	+		Sama_2703	0.68	-3.2
3,234,840	-		Sama_2703	0.68	-1.1
3,234,840	-		Sama_2703	0.68	-0.8
3,234,889	+		Sama_2703	0.74	+0.1
3,234,932	-		Sama_2703	0.79	+0.5
3,234,932	-		Sama_2703	0.79	+2.4
3,234,932	-		Sama_2703	0.79	+0.1
3,234,932	-		Sama_2703	0.79	+0.3
3,235,021	-		Sama_2703	0.89	+0.3
3,235,115	+				+1.1
3,235,116	-				-0.5
3,235,116	-				-0.7
3,235,116	-				+0.7
3,235,130	+				+2.1
3,235,131	-				+1.5
3,235,144	+				+0.1
3,235,144	+				+3.1
3,235,145	-				+1.2
3,235,145	-				+1.1
3,235,145	-				-1.3
3,235,145	-				+0.5
3,235,157	+				-0.6
3,235,157	+				-1.4
3,235,157	+				+1.7
3,235,157	+				-1.2
3,235,158	-				+1.0
3,235,158	-				+2.4
3,235,158	-				-1.3
3,235,158	-				-3.4
3,235,158	-				+2.5
3,235,158	-				-1.2