Strain Fitness in Shewanella amazonensis SB2B around Sama_2353

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
2,825,541	-				+0.9
2,825,614	+				+2.6
2,825,615	-				+0.2
2,825,626	+				+0.9
2,825,627	-				-1.1
2,825,660	+				-0.8
2,825,661	-				-2.4
2,825,661	-				-1.4
2,825,672	+				+0.8
2,825,672	+				+0.2
2,825,672	+				+1.2
2,825,673	-				-1.8
2,825,673	-				+0.2
2,825,673	-				-2.7
2,825,695	+				-1.6
2,825,702	-				-0.8
2,825,748	+				-2.3
2,825,748	+				+1.6
2,825,795	+				-3.3
2,825,828	+				+2.2
2,825,872	-				+2.0
2,826,367	-				-2.1
2,826,378	+				-0.1
2,826,379	-				-0.2
2,826,379	-				+0.2
2,826,379	-				-0.4
2,826,381	-				-3.4
2,826,381	-				-0.8
2,826,397	-				-2.3
2,826,397	-				+1.2
2,826,469	-				-2.3
2,826,486	-				-1.0
2,826,487	+				-0.8
2,826,488	-				-2.7
2,826,488	-				-1.1
2,826,488	-				-2.0
2,826,497	-				-1.5
2,826,497	-				-1.6
2,826,501	+				+1.1
2,826,536	-				-0.5
2,826,540	+				+0.5
2,826,540	+				-1.1
2,826,541	-				-0.4
2,826,541	-				+1.6
2,826,566	+		Sama_2353	0.13	-1.6
2,826,567	-		Sama_2353	0.13	-1.8
2,826,621	+		Sama_2353	0.19	+0.2
2,826,621	+		Sama_2353	0.19	-1.1
2,826,622	-		Sama_2353	0.19	-2.5
2,826,622	-		Sama_2353	0.19	+1.8
2,826,622	-		Sama_2353	0.19	+0.2
2,826,638	-		Sama_2353	0.21	-0.4
2,826,641	+		Sama_2353	0.21	+1.4
2,826,641	+		Sama_2353	0.21	+2.8
2,826,641	+		Sama_2353	0.21	+0.3
2,826,641	+		Sama_2353	0.21	-1.2
2,826,641	+		Sama_2353	0.21	+2.6
2,826,641	+		Sama_2353	0.21	-0.4
2,826,642	-		Sama_2353	0.21	+1.3
2,826,642	-		Sama_2353	0.21	-2.1
2,826,642	-		Sama_2353	0.21	-0.1
2,826,642	-		Sama_2353	0.21	+1.5
2,826,642	-		Sama_2353	0.21	+1.6
2,826,642	-		Sama_2353	0.21	+0.6
2,826,642	-		Sama_2353	0.21	-2.7
2,826,655	+		Sama_2353	0.23	-0.2
2,826,655	+		Sama_2353	0.23	+0.2
2,826,655	+		Sama_2353	0.23	+2.8
2,826,656	-		Sama_2353	0.23	-2.8
2,826,656	-		Sama_2353	0.23	-0.2
2,826,656	-		Sama_2353	0.23	+0.9
2,826,656	-		Sama_2353	0.23	-0.8
2,826,656	-		Sama_2353	0.23	-0.7
2,826,656	-		Sama_2353	0.23	-3.6
2,826,656	-		Sama_2353	0.23	+0.9
2,826,656	-		Sama_2353	0.23	+1.2
2,826,656	-		Sama_2353	0.23	-1.1
2,826,656	-		Sama_2353	0.23	+0.3
2,826,656	-		Sama_2353	0.23	-2.9
2,826,656	-		Sama_2353	0.23	-1.0
2,826,661	+		Sama_2353	0.24	-0.8
2,826,661	+		Sama_2353	0.24	-0.1
2,826,661	+		Sama_2353	0.24	-0.2
2,826,662	-		Sama_2353	0.24	+0.5
2,826,662	-		Sama_2353	0.24	-0.2
2,826,662	-		Sama_2353	0.24	+0.2
2,826,662	-		Sama_2353	0.24	+3.5
2,826,662	-		Sama_2353	0.24	-1.2
2,826,662	-		Sama_2353	0.24	+0.8
2,826,662	-		Sama_2353	0.24	+2.5
2,826,662	-		Sama_2353	0.24	-0.6
2,826,675	+		Sama_2353	0.25	+1.2
2,826,755	+		Sama_2353	0.34	-1.4
2,826,755	+		Sama_2353	0.34	-0.8
2,826,756	-		Sama_2353	0.34	-0.6
2,826,764	+		Sama_2353	0.35	-0.8
2,826,764	+		Sama_2353	0.35	+0.2
2,826,765	-		Sama_2353	0.36	+2.6
2,826,765	-		Sama_2353	0.36	+0.5
2,826,765	-		Sama_2353	0.36	-0.4
2,826,765	-		Sama_2353	0.36	-0.7
2,826,765	-		Sama_2353	0.36	+1.0
2,826,765	-		Sama_2353	0.36	+0.4
2,826,765	-		Sama_2353	0.36	-2.4
2,826,765	-		Sama_2353	0.36	-0.3
2,826,827	+		Sama_2353	0.43	-0.1
2,826,827	+		Sama_2353	0.43	-0.1
2,826,975	+		Sama_2353	0.60	+2.6
2,826,976	-		Sama_2353	0.60	-0.3
2,826,976	-		Sama_2353	0.60	+0.6
2,826,976	-		Sama_2353	0.60	+1.1
2,826,976	-		Sama_2353	0.60	-2.5
2,826,976	-		Sama_2353	0.60	+2.6
2,826,976	-		Sama_2353	0.60	-2.1
2,826,979	+		Sama_2353	0.60	+1.6
2,826,979	+		Sama_2353	0.60	-0.5
2,826,979	+		Sama_2353	0.60	+0.8
2,826,979	+		Sama_2353	0.60	-2.7
2,826,979	+		Sama_2353	0.60	+0.6
2,826,979	+		Sama_2353	0.60	+2.0
2,826,979	+		Sama_2353	0.60	+2.6
2,826,979	+		Sama_2353	0.60	+0.9
2,826,979	+		Sama_2353	0.60	-1.8
2,826,980	-		Sama_2353	0.60	+0.5
2,826,980	-		Sama_2353	0.60	+2.4
2,827,026	+		Sama_2353	0.66	+0.0
2,827,038	+		Sama_2353	0.67	-1.4
2,827,038	+		Sama_2353	0.67	+0.7
2,827,039	-		Sama_2353	0.67	+0.2
2,827,039	-		Sama_2353	0.67	+3.5
2,827,039	-		Sama_2353	0.67	-0.2
2,827,039	-		Sama_2353	0.67	-1.0
2,827,039	-		Sama_2353	0.67	-1.1
2,827,039	-		Sama_2353	0.67	+1.3
2,827,039	-		Sama_2353	0.67	-1.4
2,827,039	-		Sama_2353	0.67	-0.8
2,827,040	+		Sama_2353	0.67	+0.6
2,827,040	+		Sama_2353	0.67	+1.7
2,827,041	-		Sama_2353	0.67	+1.9
2,827,041	-		Sama_2353	0.67	-1.1
2,827,041	-		Sama_2353	0.67	-1.8
2,827,041	-		Sama_2353	0.67	+3.0
2,827,041	-		Sama_2353	0.67	+2.0
2,827,041	-		Sama_2353	0.67	-1.2
2,827,041	-		Sama_2353	0.67	+2.0
2,827,041	-		Sama_2353	0.67	+1.2
2,827,041	-		Sama_2353	0.67	+0.4
2,827,192	-		Sama_2353	0.85	-0.4
2,827,213	-		Sama_2353	0.87	+1.3
2,827,213	-		Sama_2353	0.87	+3.0
2,827,220	+		Sama_2353	0.88	+0.2
2,827,220	+		Sama_2353	0.88	-0.0
2,827,220	+		Sama_2353	0.88	-0.4
2,827,221	-		Sama_2353	0.88	-0.7
2,827,221	-		Sama_2353	0.88	+0.3
2,827,254	+				+1.4
2,827,254	+				+0.6
2,827,254	+				-0.5
2,827,277	-				+2.2
2,827,320	-				-1.6
2,827,320	-				-2.0
2,827,322	-				-1.1
2,827,322	-				+2.0
2,827,360	+				-2.3
2,827,459	-				-1.1
2,827,480	+				-2.7
2,827,481	-				+1.5
2,827,481	-				-2.4
2,827,485	+				-1.1
2,827,485	+				-2.0
2,827,486	-				-1.3
2,827,486	-				+0.6
2,827,486	-				+1.3
2,827,491	+				+1.8
2,827,491	+				+1.1
2,827,492	-				-0.8
2,827,492	-				-1.1
2,827,492	-				+0.1
2,827,513	-				+3.6
2,827,567	+				+2.5
2,827,567	+				-0.9
2,827,568	-				-1.1
2,827,570	-				+0.3
2,827,626	+				+0.2
2,827,626	+				+0.5
2,827,627	-				+2.3
2,827,642	-				+0.7
2,827,671	+				-1.6
2,827,672	-				-2.0
2,827,672	-				+1.9
2,827,672	-				-2.6
2,827,672	-				-2.0
2,827,672	-				-3.1
2,827,672	-				+2.5
2,827,672	-				+1.2
2,827,672	-				-1.3
2,827,672	-				+3.8
2,827,851	+		Sama_2354	0.55	-2.1
2,827,851	+		Sama_2354	0.55	+1.9
2,827,852	-		Sama_2354	0.56	+1.2
2,827,952	+		Sama_2354	0.82	+0.2
2,827,953	-		Sama_2354	0.82	-1.1
2,827,953	-		Sama_2354	0.82	-1.1
2,827,962	+		Sama_2354	0.85	-0.9
2,827,963	-		Sama_2354	0.85	+0.7
2,827,966	-		Sama_2354	0.86	+0.8
2,827,966	-		Sama_2354	0.86	+0.2
2,827,966	-		Sama_2354	0.86	+0.2
2,827,976	+		Sama_2354	0.88	-2.1
2,827,977	-		Sama_2354	0.88	-1.4
2,827,977	-		Sama_2354	0.88	+0.8
2,827,977	-		Sama_2354	0.88	-0.8
2,827,977	-		Sama_2354	0.88	+1.2
2,828,043	-				+0.2
2,828,069	+				+2.1
2,828,069	+				+0.5
2,828,116	-				+0.2
2,828,131	+				-0.6
2,828,131	+				+1.3
2,828,132	-				-2.0
2,828,132	-				-0.2
2,828,132	-				+0.5
2,828,132	-				-1.7
2,828,143	+				-1.4
2,828,144	-				+0.2
2,828,178	-				+1.8
2,828,180	+				+1.6
2,828,180	+				+0.2
2,828,180	+				-1.4
2,828,181	-				-0.6
2,828,181	-				+0.8
2,828,181	-				+1.5
2,828,242	+				-0.4
2,828,247	-				-1.1
2,828,279	+				+2.0