Strain Fitness in Shewanella amazonensis SB2B around Sama_2200

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
2,656,364	+		Sama_2198	0.86	+0.4
2,656,365	-		Sama_2198	0.86	+0.2
2,656,398	+				+3.5
2,656,398	+				+1.0
2,656,398	+				+0.6
2,656,398	+				+0.2
2,656,398	+				-0.2
2,656,399	-				-1.1
2,656,399	-				-0.2
2,656,399	-				-1.3
2,656,532	+				-1.1
2,656,532	+				-0.1
2,656,533	-				+2.5
2,656,563	-				+0.2
2,656,570	-				-1.8
2,656,595	+				-0.8
2,656,595	+				+0.6
2,656,596	-				-2.1
2,656,599	+				+0.4
2,656,618	+				-2.1
2,656,640	+				-0.6
2,656,640	+				+2.5
2,656,640	+				+0.2
2,656,654	+				+1.7
2,656,654	+				-1.6
2,656,655	-				+0.3
2,656,686	+				-1.1
2,656,704	+				-0.7
2,656,705	-				+2.5
2,656,742	-				-0.7
2,656,742	-				+2.2
2,656,765	+				-1.5
2,656,765	+				+0.1
2,656,774	+				+1.7
2,656,784	+				-0.8
2,656,785	-				-0.8
2,656,848	+		Sama_2199	0.17	-2.1
2,656,954	+		Sama_2199	0.38	+1.4
2,656,954	+		Sama_2199	0.38	+1.2
2,656,954	+		Sama_2199	0.38	-0.0
2,656,954	+		Sama_2199	0.38	-2.5
2,656,954	+		Sama_2199	0.38	+2.2
2,656,954	+		Sama_2199	0.38	+0.2
2,656,955	-		Sama_2199	0.38	-1.1
2,656,955	-		Sama_2199	0.38	+1.5
2,656,978	+		Sama_2199	0.42	-1.6
2,657,021	+		Sama_2199	0.51	-0.8
2,657,099	-		Sama_2199	0.66	-1.2
2,657,201	+		Sama_2199	0.87	-0.4
2,657,201	+		Sama_2199	0.87	-0.8
2,657,221	+				+0.3
2,657,222	-				-1.6
2,657,222	-				-2.4
2,657,222	-				-0.1
2,657,249	+				+1.2
2,657,300	+				+2.4
2,657,319	+				+2.3
2,657,320	-				+2.5
2,657,320	-				-0.6
2,657,353	+				+1.4
2,657,353	+				-0.4
2,657,354	-				-0.0
2,657,354	-				+2.7
2,657,354	-				+0.8
2,657,361	+				-1.4
2,657,361	+				-0.5
2,657,361	+				+1.0
2,657,362	-				+0.6
2,657,399	-				-2.0
2,657,457	-				-0.9
2,657,457	-				-1.0
2,657,530	+		Sama_2200	0.14	+0.4
2,657,531	-		Sama_2200	0.14	-1.1
2,657,531	-		Sama_2200	0.14	-0.9
2,657,635	+		Sama_2200	0.23	+0.6
2,657,635	+		Sama_2200	0.23	-2.4
2,657,636	-		Sama_2200	0.23	-1.1
2,657,686	+		Sama_2200	0.27	+0.7
2,657,721	+		Sama_2200	0.30	-1.1
2,657,721	+		Sama_2200	0.30	-0.2
2,657,721	+		Sama_2200	0.30	-1.6
2,657,722	-		Sama_2200	0.30	+0.6
2,657,722	-		Sama_2200	0.30	-1.1
2,657,726	-		Sama_2200	0.30	+1.8
2,657,726	-		Sama_2200	0.30	-0.4
2,657,726	-		Sama_2200	0.30	-0.4
2,657,742	-		Sama_2200	0.31	+0.5
2,657,871	-		Sama_2200	0.42	-2.2
2,657,898	-		Sama_2200	0.44	+1.0
2,657,921	+		Sama_2200	0.46	-0.9
2,658,136	+		Sama_2200	0.64	-1.4
2,658,137	-		Sama_2200	0.64	-0.6
2,658,137	-		Sama_2200	0.64	-1.4
2,658,137	-		Sama_2200	0.64	+0.2
2,658,138	+		Sama_2200	0.64	+0.3
2,658,138	+		Sama_2200	0.64	-0.4
2,658,138	+		Sama_2200	0.64	-0.4
2,658,138	+		Sama_2200	0.64	-0.7
2,658,138	+		Sama_2200	0.64	+2.4
2,658,138	+		Sama_2200	0.64	-0.5
2,658,139	-		Sama_2200	0.64	-2.4
2,658,139	-		Sama_2200	0.64	+0.8
2,658,139	-		Sama_2200	0.64	+0.4
2,658,139	-		Sama_2200	0.64	-0.9
2,658,139	-		Sama_2200	0.64	+2.4
2,658,139	-		Sama_2200	0.64	+0.4
2,658,139	-		Sama_2200	0.64	-1.6
2,658,139	-		Sama_2200	0.64	-1.1
2,658,210	-		Sama_2200	0.70	-0.8
2,658,311	-		Sama_2200	0.78	+0.5
2,658,321	+		Sama_2200	0.79	-0.1
2,658,321	+		Sama_2200	0.79	+1.9
2,658,321	+		Sama_2200	0.79	-2.0
2,658,322	-		Sama_2200	0.79	-0.3
2,658,322	-		Sama_2200	0.79	-1.6
2,658,322	-		Sama_2200	0.79	-2.1
2,658,323	+		Sama_2200	0.79	-1.8
2,658,323	+		Sama_2200	0.79	-0.5
2,658,324	-		Sama_2200	0.79	+0.4
2,658,324	-		Sama_2200	0.79	-0.4
2,658,324	-		Sama_2200	0.79	-0.5
2,658,343	+		Sama_2200	0.81	-2.0
2,658,571	+				-3.0
2,658,572	-				-2.2
2,658,621	-				-0.8
2,658,696	+				+0.8
2,658,772	+				+0.2
2,658,838	+		Sama_2201	0.10	-1.6
2,658,896	+		Sama_2201	0.17	-0.4
2,658,896	+		Sama_2201	0.17	-1.8
2,658,896	+		Sama_2201	0.17	-0.8
2,658,896	+		Sama_2201	0.17	-2.6
2,658,896	+		Sama_2201	0.17	+0.2
2,658,896	+		Sama_2201	0.17	-2.2
2,658,897	-		Sama_2201	0.17	+0.2
2,658,897	-		Sama_2201	0.17	-2.5
2,658,897	-		Sama_2201	0.17	-2.0
2,658,897	-		Sama_2201	0.17	-0.4
2,658,945	-		Sama_2201	0.22	+0.1
2,659,059	-		Sama_2201	0.35	-1.6
2,659,066	-		Sama_2201	0.36	-0.5
2,659,066	-		Sama_2201	0.36	+0.4
2,659,066	-		Sama_2201	0.36	-1.4
2,659,066	-		Sama_2201	0.36	+1.2
2,659,066	-		Sama_2201	0.36	-2.3
2,659,131	+		Sama_2201	0.43	-0.3
2,659,131	+		Sama_2201	0.43	+1.1
2,659,131	+		Sama_2201	0.43	-1.2
2,659,132	-		Sama_2201	0.43	+1.5
2,659,173	+		Sama_2201	0.48	-0.1
2,659,173	+		Sama_2201	0.48	+2.0
2,659,173	+		Sama_2201	0.48	-1.8
2,659,173	+		Sama_2201	0.48	+0.1
2,659,174	-		Sama_2201	0.48	-0.4
2,659,174	-		Sama_2201	0.48	+1.8
2,659,174	-		Sama_2201	0.48	+1.2
2,659,174	-		Sama_2201	0.48	-2.0
2,659,174	-		Sama_2201	0.48	+0.2
2,659,177	+		Sama_2201	0.48	-2.6
2,659,178	-		Sama_2201	0.48	-0.2
2,659,178	-		Sama_2201	0.48	-2.5
2,659,248	+		Sama_2201	0.56	+1.5
2,659,249	-		Sama_2201	0.56	-0.8
2,659,326	+		Sama_2201	0.65	-0.4
2,659,327	-		Sama_2201	0.65	-0.8
2,659,327	-		Sama_2201	0.65	+0.9
2,659,341	+		Sama_2201	0.66	+0.4
2,659,341	+		Sama_2201	0.66	-2.2
2,659,342	-		Sama_2201	0.66	+0.2
2,659,342	-		Sama_2201	0.66	-1.1
2,659,342	-		Sama_2201	0.66	+1.2
2,659,342	-		Sama_2201	0.66	-0.4
2,659,342	-		Sama_2201	0.66	+3.1
2,659,342	-		Sama_2201	0.66	+1.8
2,659,345	+		Sama_2201	0.67	-1.1
2,659,346	-		Sama_2201	0.67	+0.6
2,659,346	-		Sama_2201	0.67	+0.2
2,659,398	+		Sama_2201	0.73	+1.8
2,659,399	-		Sama_2201	0.73	-1.8
2,659,436	+		Sama_2201	0.77	-1.1
2,659,442	-		Sama_2201	0.77	-2.8
2,659,483	+		Sama_2201	0.82	+0.2
2,659,488	+		Sama_2201	0.83	-0.4
2,659,489	-		Sama_2201	0.83	+0.2
2,659,495	-		Sama_2201	0.83	-3.0
2,659,531	-		Sama_2201	0.87	-3.1
2,659,531	-		Sama_2201	0.87	+1.6
2,659,542	-		Sama_2201	0.89	-0.8
2,659,542	-		Sama_2201	0.89	-0.0
2,659,542	-		Sama_2201	0.89	+0.1
2,659,542	-		Sama_2201	0.89	-1.1
2,659,542	-		Sama_2201	0.89	+0.2