Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1654 and Sama_1655 are separated by 37 nucleotides Sama_1655 and Sama_1656 are separated by 173 nucleotides
Sama_1654: Sama_1654 - hypothetical protein (RefSeq), at 2,019,007 to 2,019,693
_1654
Sama_1655: Sama_1655 - LacI family transcription regulator (RefSeq), at 2,019,731 to 2,020,831
_1655
Sama_1656: Sama_1656 - glucan 1,4-alpha-glucosidase (RefSeq), at 2,021,005 to 2,023,458
_1656
Position (kb)
2019
2020
2021 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2018.740 kb on + strand at 2018.747 kb on + strand at 2018.747 kb on + strand at 2018.747 kb on + strand at 2018.747 kb on + strand at 2018.747 kb on + strand at 2018.751 kb on + strand at 2018.751 kb on + strand at 2018.751 kb on + strand at 2018.751 kb on + strand at 2018.751 kb on + strand at 2018.751 kb on + strand at 2018.751 kb on + strand at 2018.751 kb on + strand at 2018.752 kb on - strand at 2018.752 kb on - strand at 2018.752 kb on - strand at 2018.752 kb on - strand at 2018.752 kb on - strand at 2018.865 kb on + strand at 2018.865 kb on + strand at 2018.865 kb on + strand at 2018.866 kb on - strand at 2018.872 kb on + strand at 2018.872 kb on + strand at 2018.872 kb on + strand at 2018.872 kb on + strand at 2018.872 kb on + strand at 2018.873 kb on - strand at 2018.873 kb on - strand at 2018.873 kb on - strand at 2018.873 kb on - strand at 2018.875 kb on - strand at 2019.023 kb on + strand at 2019.023 kb on + strand at 2019.024 kb on - strand at 2019.024 kb on - strand at 2019.027 kb on + strand at 2019.027 kb on + strand at 2019.028 kb on - strand at 2019.028 kb on - strand at 2019.041 kb on + strand at 2019.041 kb on + strand at 2019.041 kb on + strand at 2019.041 kb on + strand at 2019.041 kb on + strand at 2019.042 kb on - strand at 2019.042 kb on - strand at 2019.126 kb on + strand, within Sama_1654 at 2019.144 kb on - strand, within Sama_1654 at 2019.244 kb on + strand, within Sama_1654 at 2019.244 kb on + strand, within Sama_1654 at 2019.246 kb on + strand, within Sama_1654 at 2019.246 kb on + strand, within Sama_1654 at 2019.246 kb on + strand, within Sama_1654 at 2019.247 kb on - strand, within Sama_1654 at 2019.247 kb on - strand, within Sama_1654 at 2019.328 kb on - strand, within Sama_1654 at 2019.483 kb on + strand, within Sama_1654 at 2019.484 kb on - strand, within Sama_1654 at 2019.647 kb on + strand at 2019.647 kb on + strand at 2019.648 kb on - strand at 2019.691 kb on + strand at 2019.704 kb on + strand at 2019.706 kb on + strand at 2019.706 kb on + strand at 2019.727 kb on + strand at 2019.779 kb on + strand at 2019.779 kb on + strand at 2019.780 kb on - strand at 2019.782 kb on - strand at 2019.796 kb on + strand at 2019.935 kb on - strand, within Sama_1655 at 2019.939 kb on - strand, within Sama_1655 at 2019.939 kb on - strand, within Sama_1655 at 2020.037 kb on - strand, within Sama_1655 at 2020.066 kb on + strand, within Sama_1655 at 2020.066 kb on + strand, within Sama_1655 at 2020.066 kb on + strand, within Sama_1655 at 2020.066 kb on + strand, within Sama_1655 at 2020.067 kb on - strand, within Sama_1655 at 2020.067 kb on - strand, within Sama_1655 at 2020.078 kb on + strand, within Sama_1655 at 2020.145 kb on + strand, within Sama_1655 at 2020.145 kb on + strand, within Sama_1655 at 2020.172 kb on - strand, within Sama_1655 at 2020.174 kb on + strand, within Sama_1655 at 2020.205 kb on + strand, within Sama_1655 at 2020.206 kb on - strand, within Sama_1655 at 2020.206 kb on - strand, within Sama_1655 at 2020.320 kb on + strand, within Sama_1655 at 2020.320 kb on + strand, within Sama_1655 at 2020.323 kb on + strand, within Sama_1655 at 2020.323 kb on + strand, within Sama_1655 at 2020.324 kb on - strand, within Sama_1655 at 2020.338 kb on + strand, within Sama_1655 at 2020.338 kb on + strand, within Sama_1655 at 2020.339 kb on - strand, within Sama_1655 at 2020.435 kb on + strand, within Sama_1655 at 2020.435 kb on + strand, within Sama_1655 at 2020.436 kb on - strand, within Sama_1655 at 2020.522 kb on + strand, within Sama_1655 at 2020.643 kb on + strand, within Sama_1655 at 2020.643 kb on + strand, within Sama_1655 at 2020.644 kb on - strand, within Sama_1655 at 2020.651 kb on + strand, within Sama_1655 at 2020.687 kb on + strand, within Sama_1655 at 2020.687 kb on + strand, within Sama_1655 at 2020.687 kb on + strand, within Sama_1655 at 2020.688 kb on - strand, within Sama_1655 at 2020.776 kb on + strand at 2020.882 kb on + strand at 2020.972 kb on + strand at 2020.972 kb on + strand at 2020.973 kb on - strand at 2020.986 kb on + strand at 2020.987 kb on - strand at 2021.006 kb on + strand at 2021.007 kb on - strand at 2021.042 kb on + strand at 2021.042 kb on + strand at 2021.043 kb on - strand at 2021.043 kb on - strand at 2021.046 kb on + strand at 2021.086 kb on + strand at 2021.090 kb on + strand at 2021.130 kb on + strand at 2021.130 kb on + strand at 2021.131 kb on - strand at 2021.199 kb on + strand at 2021.200 kb on - strand at 2021.237 kb on + strand at 2021.237 kb on + strand at 2021.238 kb on - strand at 2021.238 kb on - strand at 2021.241 kb on + strand at 2021.241 kb on + strand at 2021.241 kb on + strand at 2021.242 kb on - strand at 2021.242 kb on - strand at 2021.242 kb on - strand at 2021.242 kb on - strand at 2021.309 kb on + strand, within Sama_1656 at 2021.309 kb on + strand, within Sama_1656 at 2021.384 kb on + strand, within Sama_1656 at 2021.385 kb on - strand, within Sama_1656 at 2021.385 kb on - strand, within Sama_1656 at 2021.404 kb on - strand, within Sama_1656 at 2021.404 kb on - strand, within Sama_1656 at 2021.632 kb on - strand, within Sama_1656 at 2021.632 kb on - strand, within Sama_1656 at 2021.689 kb on - strand, within Sama_1656 at 2021.689 kb on - strand, within Sama_1656 at 2021.690 kb on + strand, within Sama_1656 at 2021.691 kb on - strand, within Sama_1656 at 2021.691 kb on - strand, within Sama_1656 at 2021.722 kb on + strand, within Sama_1656 at 2021.727 kb on + strand, within Sama_1656 at 2021.750 kb on + strand, within Sama_1656 at 2021.750 kb on + strand, within Sama_1656 at 2021.750 kb on + strand, within Sama_1656 at 2021.751 kb on - strand, within Sama_1656 at 2021.771 kb on + strand, within Sama_1656
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 2,018,740 + +1.7 2,018,747 + -2.1 2,018,747 + -0.3 2,018,747 + +0.8 2,018,747 + +2.1 2,018,747 + -0.7 2,018,751 + +0.7 2,018,751 + +1.3 2,018,751 + -1.0 2,018,751 + -2.5 2,018,751 + +3.0 2,018,751 + -1.7 2,018,751 + -0.3 2,018,751 + +0.9 2,018,752 - -0.4 2,018,752 - +0.5 2,018,752 - +1.7 2,018,752 - -1.5 2,018,752 - -0.1 2,018,865 + +0.2 2,018,865 + -0.3 2,018,865 + -0.1 2,018,866 - -1.7 2,018,872 + +0.1 2,018,872 + -2.5 2,018,872 + -0.7 2,018,872 + -2.7 2,018,872 + +0.9 2,018,873 - +0.9 2,018,873 - -0.3 2,018,873 - +0.9 2,018,873 - +2.0 2,018,875 - +1.9 2,019,023 + +0.5 2,019,023 + +1.7 2,019,024 - -0.7 2,019,024 - +2.8 2,019,027 + +1.3 2,019,027 + +0.4 2,019,028 - -2.6 2,019,028 - +1.5 2,019,041 + +0.9 2,019,041 + -1.1 2,019,041 + +3.2 2,019,041 + +0.4 2,019,041 + -1.7 2,019,042 - +1.9 2,019,042 - -0.0 2,019,126 + Sama_1654 0.17 -0.7 2,019,144 - Sama_1654 0.20 +0.3 2,019,244 + Sama_1654 0.34 -1.5 2,019,244 + Sama_1654 0.34 -2.5 2,019,246 + Sama_1654 0.35 +1.6 2,019,246 + Sama_1654 0.35 +0.2 2,019,246 + Sama_1654 0.35 -2.8 2,019,247 - Sama_1654 0.35 -0.7 2,019,247 - Sama_1654 0.35 +0.5 2,019,328 - Sama_1654 0.47 -0.7 2,019,483 + Sama_1654 0.69 -1.4 2,019,484 - Sama_1654 0.69 -1.1 2,019,647 + -0.9 2,019,647 + +1.3 2,019,648 - +1.2 2,019,691 + -1.5 2,019,704 + +2.6 2,019,706 + +1.0 2,019,706 + -0.6 2,019,727 + -0.7 2,019,779 + -1.1 2,019,779 + -1.5 2,019,780 - -1.1 2,019,782 - +0.0 2,019,796 + +0.4 2,019,935 - Sama_1655 0.19 -1.1 2,019,939 - Sama_1655 0.19 +1.2 2,019,939 - Sama_1655 0.19 -0.4 2,020,037 - Sama_1655 0.28 -1.5 2,020,066 + Sama_1655 0.30 -1.7 2,020,066 + Sama_1655 0.30 +2.3 2,020,066 + Sama_1655 0.30 -1.1 2,020,066 + Sama_1655 0.30 -0.7 2,020,067 - Sama_1655 0.31 -1.1 2,020,067 - Sama_1655 0.31 +0.1 2,020,078 + Sama_1655 0.32 +1.9 2,020,145 + Sama_1655 0.38 -1.1 2,020,145 + Sama_1655 0.38 -0.5 2,020,172 - Sama_1655 0.40 +0.9 2,020,174 + Sama_1655 0.40 +0.6 2,020,205 + Sama_1655 0.43 +0.7 2,020,206 - Sama_1655 0.43 +0.9 2,020,206 - Sama_1655 0.43 -1.1 2,020,320 + Sama_1655 0.53 +3.0 2,020,320 + Sama_1655 0.53 +1.3 2,020,323 + Sama_1655 0.54 -1.4 2,020,323 + Sama_1655 0.54 +1.9 2,020,324 - Sama_1655 0.54 +3.8 2,020,338 + Sama_1655 0.55 -1.6 2,020,338 + Sama_1655 0.55 +1.5 2,020,339 - Sama_1655 0.55 +1.7 2,020,435 + Sama_1655 0.64 +2.9 2,020,435 + Sama_1655 0.64 -0.9 2,020,436 - Sama_1655 0.64 +1.6 2,020,522 + Sama_1655 0.72 -0.1 2,020,643 + Sama_1655 0.83 -0.1 2,020,643 + Sama_1655 0.83 -0.6 2,020,644 - Sama_1655 0.83 -1.1 2,020,651 + Sama_1655 0.84 +1.8 2,020,687 + Sama_1655 0.87 -0.3 2,020,687 + Sama_1655 0.87 +3.0 2,020,687 + Sama_1655 0.87 -2.1 2,020,688 - Sama_1655 0.87 -0.9 2,020,776 + +2.1 2,020,882 + +0.5 2,020,972 + -1.5 2,020,972 + -2.1 2,020,973 - -0.9 2,020,986 + -2.6 2,020,987 - -0.6 2,021,006 + -2.6 2,021,007 - +0.2 2,021,042 + -1.5 2,021,042 + +3.0 2,021,043 - -0.1 2,021,043 - +1.7 2,021,046 + -1.7 2,021,086 + -2.3 2,021,090 + -0.1 2,021,130 + +0.2 2,021,130 + +0.9 2,021,131 - -0.3 2,021,199 + +0.2 2,021,200 - +0.7 2,021,237 + -1.1 2,021,237 + -1.1 2,021,238 - -1.7 2,021,238 - +2.6 2,021,241 + +0.1 2,021,241 + -1.1 2,021,241 + -0.4 2,021,242 - -1.1 2,021,242 - +0.1 2,021,242 - -1.7 2,021,242 - -0.1 2,021,309 + Sama_1656 0.12 +0.9 2,021,309 + Sama_1656 0.12 +5.3 2,021,384 + Sama_1656 0.15 +1.8 2,021,385 - Sama_1656 0.15 +2.1 2,021,385 - Sama_1656 0.15 +0.9 2,021,404 - Sama_1656 0.16 -0.4 2,021,404 - Sama_1656 0.16 -1.8 2,021,632 - Sama_1656 0.26 -1.7 2,021,632 - Sama_1656 0.26 +0.4 2,021,689 - Sama_1656 0.28 +0.0 2,021,689 - Sama_1656 0.28 -0.7 2,021,690 + Sama_1656 0.28 -0.7 2,021,691 - Sama_1656 0.28 -0.7 2,021,691 - Sama_1656 0.28 -2.5 2,021,722 + Sama_1656 0.29 +0.9 2,021,727 + Sama_1656 0.29 -1.3 2,021,750 + Sama_1656 0.30 -0.1 2,021,750 + Sama_1656 0.30 -0.8 2,021,750 + Sama_1656 0.30 +0.3 2,021,751 - Sama_1656 0.30 +0.4 2,021,771 + Sama_1656 0.31 +2.1
Or see this region's nucleotide sequence