Strain Fitness in Shewanella amazonensis SB2B around Sama_1417

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,719,432	+		Sama_1416	0.49	-0.3
1,719,432	+		Sama_1416	0.49	+0.9
1,719,433	-		Sama_1416	0.49	-1.5
1,719,465	-		Sama_1416	0.51	-0.1
1,719,487	+		Sama_1416	0.52	+3.9
1,719,487	+		Sama_1416	0.52	-1.1
1,719,488	-		Sama_1416	0.52	+0.9
1,719,488	-		Sama_1416	0.52	+0.5
1,719,488	-		Sama_1416	0.52	+1.1
1,719,502	+		Sama_1416	0.53	-1.1
1,719,502	+		Sama_1416	0.53	-0.1
1,719,502	+		Sama_1416	0.53	-0.6
1,719,502	+		Sama_1416	0.53	+0.2
1,719,503	-		Sama_1416	0.53	-2.4
1,719,539	+		Sama_1416	0.55	+0.7
1,719,539	+		Sama_1416	0.55	-1.7
1,719,539	+		Sama_1416	0.55	+1.9
1,719,540	-		Sama_1416	0.55	+1.9
1,719,540	-		Sama_1416	0.55	-0.7
1,719,718	+		Sama_1416	0.66	+1.3
1,719,718	+		Sama_1416	0.66	+1.2
1,719,718	+		Sama_1416	0.66	+1.7
1,719,718	+		Sama_1416	0.66	+0.3
1,719,718	+		Sama_1416	0.66	+1.6
1,719,719	-		Sama_1416	0.66	-2.3
1,719,864	+		Sama_1416	0.74	-3.1
1,719,864	+		Sama_1416	0.74	-2.3
1,719,891	+		Sama_1416	0.75	-2.3
1,719,892	-		Sama_1416	0.75	-1.1
1,719,895	+		Sama_1416	0.76	-0.7
1,719,895	+		Sama_1416	0.76	+1.6
1,719,895	+		Sama_1416	0.76	-1.7
1,719,895	+		Sama_1416	0.76	+0.1
1,719,896	-		Sama_1416	0.76	-0.4
1,719,896	-		Sama_1416	0.76	+0.3
1,719,896	-		Sama_1416	0.76	+0.9
1,719,896	-		Sama_1416	0.76	-0.7
1,719,961	+		Sama_1416	0.79	+1.2
1,719,961	+		Sama_1416	0.79	-1.4
1,719,961	+		Sama_1416	0.79	-1.4
1,719,962	-		Sama_1416	0.79	-0.8
1,719,962	-		Sama_1416	0.79	-1.4
1,720,130	+		Sama_1416	0.89	-1.2
1,720,130	+		Sama_1416	0.89	-0.1
1,720,130	+		Sama_1416	0.89	-2.4
1,720,130	+		Sama_1416	0.89	+1.6
1,720,131	-		Sama_1416	0.89	+0.2
1,720,131	-		Sama_1416	0.89	+0.3
1,720,131	-		Sama_1416	0.89	-3.2
1,720,148	+				+1.4
1,720,148	+				+0.3
1,720,149	-				-3.1
1,720,149	-				+0.8
1,720,154	-				-2.5
1,720,154	-				+1.7
1,720,154	-				+1.9
1,720,154	-				+0.1
1,720,196	-				-1.1
1,720,196	-				-2.5
1,720,196	-				-0.7
1,720,212	+				+1.7
1,720,212	+				+1.7
1,720,266	+				+0.5
1,720,266	+				+0.7
1,720,267	-				+0.0
1,720,267	-				-1.3
1,720,267	-				-0.9
1,720,275	+				-0.7
1,720,308	+				-1.0
1,720,308	+				+1.5
1,720,308	+				-0.2
1,720,309	-				+0.3
1,720,309	-				-3.3
1,720,436	+				-0.8
1,720,448	+				+0.2
1,720,449	-				+0.5
1,720,449	-				+4.5
1,720,449	-				+4.5
1,720,550	+				-2.9
1,720,551	-				+3.2
1,720,551	-				+0.2
1,720,551	-				+0.7
1,720,560	-				+0.9
1,720,560	-				-0.7
1,720,564	-				-1.4
1,720,567	+				-1.2
1,720,567	+				-1.1
1,720,567	+				+1.8
1,720,567	+				-0.8
1,720,567	+				-0.5
1,720,568	-				+0.9
1,720,568	-				-1.9
1,720,568	-				+0.5
1,720,568	-				+1.4
1,720,568	-				-0.2
1,720,568	-				+1.6
1,720,568	-				+2.6
1,720,568	-				-0.8
1,720,579	+				+3.1
1,720,586	+				-1.0
1,720,586	+				-0.7
1,720,586	+				-0.7
1,720,586	+				-1.7
1,720,587	-				-0.1
1,720,587	-				+1.7
1,720,587	-				+0.9
1,720,587	-				+2.1
1,720,590	+				-0.7
1,720,590	+				-1.1
1,720,590	+				-2.5
1,720,590	+				+0.9
1,720,590	+				-0.3
1,720,590	+				-1.9
1,720,591	-				+0.7
1,720,591	-				-1.4
1,720,591	-				+0.2
1,720,591	-				-1.9
1,720,591	-				+2.6
1,720,591	-				-2.4
1,720,591	-				+0.2
1,720,591	-				+0.1
1,720,591	-				-1.4
1,720,591	-				-0.2
1,720,652	+		Sama_1417	0.14	-0.8
1,720,668	+		Sama_1417	0.15	+0.5
1,720,674	+		Sama_1417	0.15	+0.9
1,720,675	-		Sama_1417	0.15	-1.1
1,720,694	+		Sama_1417	0.16	+0.9
1,720,694	+		Sama_1417	0.16	+1.1
1,720,706	+		Sama_1417	0.17	+1.2
1,720,706	+		Sama_1417	0.17	+0.0
1,720,707	-		Sama_1417	0.17	+0.5
1,720,707	-		Sama_1417	0.17	-2.1
1,720,707	-		Sama_1417	0.17	-1.1
1,720,710	-		Sama_1417	0.17	+2.5
1,720,775	+		Sama_1417	0.21	-2.9
1,720,775	+		Sama_1417	0.21	-2.1
1,720,776	-		Sama_1417	0.21	+0.9
1,720,776	-		Sama_1417	0.21	+0.3
1,720,794	-		Sama_1417	0.22	-1.3
1,720,882	-		Sama_1417	0.28	+2.3
1,720,882	-		Sama_1417	0.28	-0.8
1,720,886	+		Sama_1417	0.28	+0.7
1,720,887	-		Sama_1417	0.28	-1.3
1,720,887	-		Sama_1417	0.28	+0.3
1,720,887	-		Sama_1417	0.28	+0.2
1,720,887	-		Sama_1417	0.28	+1.6
1,720,970	+		Sama_1417	0.33	-2.1
1,720,971	-		Sama_1417	0.33	+0.5
1,720,971	-		Sama_1417	0.33	+1.8
1,721,012	-		Sama_1417	0.36	+1.3
1,721,012	-		Sama_1417	0.36	-0.0
1,721,044	+		Sama_1417	0.38	-2.4
1,721,048	+		Sama_1417	0.38	+0.9
1,721,048	+		Sama_1417	0.38	-1.4
1,721,049	-		Sama_1417	0.38	+0.5
1,721,049	-		Sama_1417	0.38	-3.0
1,721,049	-		Sama_1417	0.38	+2.8
1,721,056	+		Sama_1417	0.38	-2.9
1,721,109	-		Sama_1417	0.42	-0.1
1,721,109	-		Sama_1417	0.42	+2.0
1,721,112	-		Sama_1417	0.42	+0.3
1,721,114	-		Sama_1417	0.42	-2.7
1,721,195	+		Sama_1417	0.47	+1.0
1,721,196	-		Sama_1417	0.47	+0.2
1,721,240	+		Sama_1417	0.50	-2.0
1,721,266	+		Sama_1417	0.51	-0.1
1,721,267	-		Sama_1417	0.51	+0.9
1,721,305	+		Sama_1417	0.54	+0.2
1,721,306	-		Sama_1417	0.54	+2.3
1,721,332	+		Sama_1417	0.55	+2.4
1,721,332	+		Sama_1417	0.55	+0.5
1,721,332	+		Sama_1417	0.55	-1.9
1,721,376	-		Sama_1417	0.58	+2.2
1,721,410	+		Sama_1417	0.60	+0.9
1,721,410	+		Sama_1417	0.60	-2.7
1,721,411	-		Sama_1417	0.60	+0.6
1,721,474	+		Sama_1417	0.64	-0.5
1,721,474	+		Sama_1417	0.64	-2.5
1,721,475	-		Sama_1417	0.64	+1.8
1,721,592	+		Sama_1417	0.71	+0.9
1,721,592	+		Sama_1417	0.71	-1.9
1,721,672	-		Sama_1417	0.76	-1.8
1,721,696	+		Sama_1417	0.77	-1.4
1,721,697	-		Sama_1417	0.77	+0.5
1,721,698	+		Sama_1417	0.78	-0.7
1,721,698	+		Sama_1417	0.78	-0.5
1,721,698	+		Sama_1417	0.78	+4.5
1,721,698	+		Sama_1417	0.78	-1.1
1,721,698	+		Sama_1417	0.78	+0.9
1,721,699	-		Sama_1417	0.78	+1.5
1,721,699	-		Sama_1417	0.78	+0.2
1,721,710	+		Sama_1417	0.78	-2.7
1,721,720	+		Sama_1417	0.79	-2.5
1,721,732	+		Sama_1417	0.80	-1.7
1,721,733	-		Sama_1417	0.80	+1.0
1,721,745	-		Sama_1417	0.80	-0.4
1,721,845	-		Sama_1417	0.87	-2.1
1,721,891	+		Sama_1417	0.89	-1.1
1,721,892	-		Sama_1417	0.89	+2.9
1,721,892	-		Sama_1417	0.89	-0.1
1,721,892	-		Sama_1417	0.89	-1.3
1,721,894	-		Sama_1417	0.89	+0.8
1,721,911	+				+0.7
1,721,912	-				-1.5
1,721,912	-				-1.7
1,721,912	-				+0.5
1,721,958	+				+2.4
1,721,960	+				-1.4
1,721,960	+				-2.9
1,721,961	-				+1.4
1,721,961	-				-1.4
1,721,961	-				-0.3
1,721,961	-				+3.2
1,721,961	-				+1.2
1,721,961	-				+0.1
1,722,032	+				+2.2
1,722,033	-				-1.0
1,722,033	-				+1.2
1,722,039	+				-2.5
1,722,058	-				-0.1
1,722,058	-				-1.4
1,722,058	-				-2.1
1,722,079	+				-1.1
1,722,079	+				-1.1
1,722,079	+				-1.7
1,722,079	+				-2.3
1,722,080	-				+2.2
1,722,080	-				+1.8
1,722,097	+				-1.7
1,722,097	+				+1.7
1,722,097	+				-2.1
1,722,107	+				-1.4
1,722,107	+				-0.3
1,722,107	+				-1.1
1,722,108	-				+1.4
1,722,150	+				+0.2
1,722,248	+				+0.7
1,722,269	+				-0.9
1,722,315	+				-1.9
1,722,342	+				-0.7
1,722,342	+				-2.9
1,722,351	+				+1.7
1,722,351	+				+0.3
1,722,449	-		Sama_1418	0.13	-1.1
1,722,465	+		Sama_1418	0.15	-0.7
1,722,465	+		Sama_1418	0.15	-2.5
1,722,465	+		Sama_1418	0.15	-2.4
1,722,466	-		Sama_1418	0.15	+1.0
1,722,466	-		Sama_1418	0.15	-0.7
1,722,484	-		Sama_1418	0.16	-2.1
1,722,539	+		Sama_1418	0.20	-1.1
1,722,539	+		Sama_1418	0.20	+0.5
1,722,588	+		Sama_1418	0.24	+0.3
1,722,588	+		Sama_1418	0.24	+0.9
1,722,588	+		Sama_1418	0.24	-0.5
1,722,631	+		Sama_1418	0.27	-2.1
1,722,631	+		Sama_1418	0.27	+2.6
1,722,631	+		Sama_1418	0.27	-1.9
1,722,631	+		Sama_1418	0.27	+0.3
1,722,632	-		Sama_1418	0.27	-1.7
1,722,632	-		Sama_1418	0.27	+0.7
1,722,644	+		Sama_1418	0.28	+2.1
1,722,644	+		Sama_1418	0.28	+0.2
1,722,661	+		Sama_1418	0.29	+1.6
1,722,661	+		Sama_1418	0.29	+0.6
1,722,661	+		Sama_1418	0.29	-1.7
1,722,661	+		Sama_1418	0.29	-0.0
1,722,662	-		Sama_1418	0.29	-0.7
1,722,681	+		Sama_1418	0.31	+1.3
1,722,681	+		Sama_1418	0.31	-1.4
1,722,682	-		Sama_1418	0.31	-2.8
1,722,682	-		Sama_1418	0.31	-1.4
1,722,756	+		Sama_1418	0.36	+0.9
1,722,757	-		Sama_1418	0.36	+0.3
1,722,769	+		Sama_1418	0.37	+0.9
1,722,834	+		Sama_1418	0.42	-0.7
1,722,880	+		Sama_1418	0.46	+0.8
1,722,914	+		Sama_1418	0.48	+1.4
1,722,914	+		Sama_1418	0.48	+1.5
1,722,999	+		Sama_1418	0.54	+0.4
1,723,000	-		Sama_1418	0.54	+1.2
1,723,008	+		Sama_1418	0.55	+0.4
1,723,008	+		Sama_1418	0.55	-2.7
1,723,009	-		Sama_1418	0.55	+1.7