Strain Fitness in Shewanella amazonensis SB2B around Sama_1402

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,700,225	+		Sama_1401	0.28	+0.5
1,700,225	+		Sama_1401	0.28	-1.9
1,700,226	-		Sama_1401	0.28	-0.7
1,700,226	-		Sama_1401	0.28	-1.9
1,700,226	-		Sama_1401	0.28	+3.7
1,700,246	+		Sama_1401	0.29	-1.4
1,700,247	-		Sama_1401	0.29	+1.1
1,700,247	-		Sama_1401	0.29	+0.5
1,700,247	-		Sama_1401	0.29	-1.7
1,700,295	+		Sama_1401	0.33	+2.0
1,700,312	+		Sama_1401	0.34	+1.9
1,700,312	+		Sama_1401	0.34	+3.1
1,700,312	+		Sama_1401	0.34	-1.4
1,700,312	+		Sama_1401	0.34	+0.6
1,700,312	+		Sama_1401	0.34	-0.1
1,700,313	-		Sama_1401	0.34	-1.9
1,700,313	-		Sama_1401	0.34	-0.1
1,700,313	-		Sama_1401	0.34	-0.7
1,700,326	-		Sama_1401	0.35	+1.6
1,700,326	-		Sama_1401	0.35	+2.2
1,700,429	+		Sama_1401	0.43	-0.1
1,700,429	+		Sama_1401	0.43	-2.4
1,700,429	+		Sama_1401	0.43	-2.8
1,700,430	-		Sama_1401	0.43	-0.7
1,700,430	-		Sama_1401	0.43	+2.2
1,700,438	+		Sama_1401	0.44	+0.8
1,700,438	+		Sama_1401	0.44	-3.0
1,700,441	+		Sama_1401	0.44	+0.4
1,700,442	-		Sama_1401	0.44	+0.9
1,700,442	-		Sama_1401	0.44	+0.8
1,700,442	-		Sama_1401	0.44	+3.9
1,700,442	-		Sama_1401	0.44	+0.6
1,700,442	-		Sama_1401	0.44	-2.4
1,700,442	-		Sama_1401	0.44	-1.1
1,700,442	-		Sama_1401	0.44	-2.5
1,700,460	+		Sama_1401	0.45	-1.7
1,700,460	+		Sama_1401	0.45	+0.9
1,700,460	+		Sama_1401	0.45	-0.5
1,700,460	+		Sama_1401	0.45	+0.3
1,700,461	-		Sama_1401	0.45	+1.7
1,700,465	-		Sama_1401	0.46	-1.2
1,700,608	+		Sama_1401	0.56	+0.3
1,700,631	+		Sama_1401	0.58	+1.4
1,700,631	+		Sama_1401	0.58	-2.7
1,700,631	+		Sama_1401	0.58	-1.0
1,700,632	-		Sama_1401	0.58	-0.4
1,700,645	-		Sama_1401	0.59	-0.1
1,700,658	-		Sama_1401	0.60	-2.8
1,700,743	+		Sama_1401	0.67	+1.4
1,700,743	+		Sama_1401	0.67	-2.1
1,700,744	-		Sama_1401	0.67	-1.0
1,700,744	-		Sama_1401	0.67	-1.1
1,700,744	-		Sama_1401	0.67	+1.3
1,700,754	-		Sama_1401	0.67	+1.3
1,700,813	+		Sama_1401	0.72	+0.9
1,700,813	+		Sama_1401	0.72	-2.3
1,700,814	-		Sama_1401	0.72	+2.1
1,700,814	-		Sama_1401	0.72	-0.7
1,700,814	-		Sama_1401	0.72	+0.8
1,700,820	+		Sama_1401	0.72	+4.6
1,700,821	-		Sama_1401	0.72	-0.7
1,700,855	+		Sama_1401	0.75	+0.8
1,700,855	+		Sama_1401	0.75	-0.8
1,700,855	+		Sama_1401	0.75	-0.7
1,700,855	+		Sama_1401	0.75	+2.6
1,700,856	-		Sama_1401	0.75	+2.7
1,700,856	-		Sama_1401	0.75	+1.2
1,700,856	-		Sama_1401	0.75	+2.1
1,700,856	-		Sama_1401	0.75	+0.9
1,700,870	+		Sama_1401	0.76	+2.4
1,700,871	-		Sama_1401	0.76	+0.9
1,700,907	+		Sama_1401	0.79	+0.7
1,700,908	-		Sama_1401	0.79	-0.1
1,700,917	+		Sama_1401	0.80	-2.8
1,700,917	+		Sama_1401	0.80	+0.6
1,700,918	-		Sama_1401	0.80	+0.4
1,700,918	-		Sama_1401	0.80	+0.7
1,700,953	+		Sama_1401	0.82	-1.5
1,700,953	+		Sama_1401	0.82	+0.3
1,700,953	+		Sama_1401	0.82	-0.9
1,700,953	+		Sama_1401	0.82	+0.1
1,700,953	+		Sama_1401	0.82	-0.1
1,700,953	+		Sama_1401	0.82	+2.3
1,700,953	+		Sama_1401	0.82	-2.7
1,700,954	-		Sama_1401	0.82	-2.1
1,700,954	-		Sama_1401	0.82	-0.5
1,700,954	-		Sama_1401	0.82	+0.9
1,700,954	-		Sama_1401	0.82	+0.6
1,700,954	-		Sama_1401	0.82	-1.1
1,700,954	-		Sama_1401	0.82	-2.9
1,700,957	+		Sama_1401	0.83	-3.0
1,700,957	+		Sama_1401	0.83	+0.6
1,700,957	+		Sama_1401	0.83	-0.5
1,700,958	-		Sama_1401	0.83	+3.1
1,700,958	-		Sama_1401	0.83	+1.9
1,700,958	-		Sama_1401	0.83	+2.0
1,701,003	-		Sama_1401	0.86	-0.7
1,701,040	+		Sama_1401	0.89	-1.1
1,701,040	+		Sama_1401	0.89	+0.3
1,701,041	-		Sama_1401	0.89	-0.7
1,701,065	+				+0.0
1,701,066	-				-1.1
1,701,066	-				+1.6
1,701,077	-				+0.9
1,701,088	-				-2.3
1,701,093	+				-2.1
1,701,093	+				+0.9
1,701,096	-				+0.2
1,701,205	+				+0.1
1,701,206	-				-0.7
1,701,206	-				+0.9
1,701,208	+				+1.2
1,701,209	-				-1.7
1,701,209	-				+1.8
1,701,250	+				+2.8
1,701,250	+				-1.1
1,701,251	-				-1.3
1,701,292	+				-2.5
1,701,301	+				+1.3
1,701,301	+				-2.3
1,701,301	+				-2.7
1,701,302	-				+0.3
1,701,302	-				-0.1
1,701,399	-		Sama_1402	0.14	+0.4
1,701,508	+		Sama_1402	0.22	+3.2
1,701,509	-		Sama_1402	0.22	+2.5
1,701,509	-		Sama_1402	0.22	-1.4
1,701,524	+		Sama_1402	0.23	+0.5
1,701,650	-		Sama_1402	0.33	+0.9
1,701,664	+		Sama_1402	0.34	+0.2
1,701,664	+		Sama_1402	0.34	-2.1
1,701,664	+		Sama_1402	0.34	+1.9
1,701,667	+		Sama_1402	0.34	-2.0
1,701,667	+		Sama_1402	0.34	+0.2
1,701,667	+		Sama_1402	0.34	-2.9
1,701,667	+		Sama_1402	0.34	-1.9
1,701,667	+		Sama_1402	0.34	+0.9
1,701,667	+		Sama_1402	0.34	-0.1
1,701,668	-		Sama_1402	0.34	+1.6
1,701,682	+		Sama_1402	0.35	-1.7
1,701,695	+		Sama_1402	0.36	+2.5
1,701,695	+		Sama_1402	0.36	+0.9
1,701,696	-		Sama_1402	0.36	+1.1
1,701,704	+		Sama_1402	0.37	+0.2
1,701,710	+		Sama_1402	0.37	+0.7
1,701,797	-		Sama_1402	0.43	+0.3
1,701,811	+		Sama_1402	0.44	+0.9
1,701,811	+		Sama_1402	0.44	+2.0
1,701,811	+		Sama_1402	0.44	-1.5
1,701,812	-		Sama_1402	0.45	-0.7
1,701,812	-		Sama_1402	0.45	-2.3
1,701,860	-		Sama_1402	0.48	-1.4
1,701,860	-		Sama_1402	0.48	-2.1
1,701,882	-		Sama_1402	0.50	+0.8
1,701,888	+		Sama_1402	0.50	+0.9
1,701,889	-		Sama_1402	0.50	-0.4
1,701,889	-		Sama_1402	0.50	-0.8
1,701,939	-		Sama_1402	0.54	-1.0
1,702,010	+		Sama_1402	0.59	-2.1
1,702,011	-		Sama_1402	0.59	-0.3
1,702,063	+		Sama_1402	0.63	-0.4
1,702,063	+		Sama_1402	0.63	+3.0
1,702,063	+		Sama_1402	0.63	-0.1
1,702,064	-		Sama_1402	0.63	-1.2
1,702,069	+		Sama_1402	0.63	+1.0
1,702,069	+		Sama_1402	0.63	-0.7
1,702,070	-		Sama_1402	0.64	+2.5
1,702,070	-		Sama_1402	0.64	+1.2
1,702,070	-		Sama_1402	0.64	-0.1
1,702,070	-		Sama_1402	0.64	+0.9
1,702,108	+		Sama_1402	0.66	+0.8
1,702,109	-		Sama_1402	0.66	+0.8
1,702,109	-		Sama_1402	0.66	+1.8
1,702,173	+		Sama_1402	0.71	+0.5
1,702,173	+		Sama_1402	0.71	+1.8
1,702,174	-		Sama_1402	0.71	+1.5
1,702,174	-		Sama_1402	0.71	-0.5
1,702,206	-		Sama_1402	0.74	+0.6
1,702,238	+		Sama_1402	0.76	+0.3
1,702,238	+		Sama_1402	0.76	+3.1
1,702,238	+		Sama_1402	0.76	-0.1
1,702,239	-		Sama_1402	0.76	+3.2
1,702,239	-		Sama_1402	0.76	+0.6
1,702,244	-		Sama_1402	0.76	-1.9
1,702,244	-		Sama_1402	0.76	+1.5
1,702,284	+		Sama_1402	0.79	-2.1
1,702,284	+		Sama_1402	0.79	-1.7
1,702,284	+		Sama_1402	0.79	+1.0
1,702,284	+		Sama_1402	0.79	+1.4
1,702,284	+		Sama_1402	0.79	-1.8
1,702,284	+		Sama_1402	0.79	-2.1
1,702,285	-		Sama_1402	0.79	+1.2
1,702,285	-		Sama_1402	0.79	+1.8
1,702,285	-		Sama_1402	0.79	+0.7
1,702,442	+				+0.8
1,702,443	-				+0.3
1,702,443	-				+0.3
1,702,524	+				-0.1
1,702,524	+				-0.7
1,702,607	+				-1.4
1,702,607	+				-2.1
1,702,607	+				-1.8
1,702,607	+				-2.4
1,702,608	-				-2.8
1,702,608	-				+1.7
1,702,608	-				+1.4
1,702,705	-				-1.7
1,702,750	+				+0.6
1,702,750	+				-1.4
1,702,778	-				-2.4
1,702,803	+				-2.1
1,702,804	-				-1.7
1,702,804	-				-2.3
1,702,807	+				-1.7
1,702,807	+				-1.7
1,702,807	+				-2.4
1,702,808	-				-1.9
1,702,851	-				+0.9
1,702,851	-				+0.9
1,702,889	-				-1.1
1,702,901	-				+0.2
1,703,000	+		Sama_1403	0.17	-1.1
1,703,062	-		Sama_1403	0.22	-2.1