Strain Fitness in Shewanella amazonensis SB2B around Sama_1202

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,474,154	-		Sama_1201	0.41	-1.9
1,474,154	-		Sama_1201	0.41	-0.1
1,474,154	-		Sama_1201	0.41	-0.0
1,474,156	+		Sama_1201	0.41	-2.4
1,474,157	-		Sama_1201	0.41	-1.5
1,474,157	-		Sama_1201	0.41	-1.4
1,474,157	-		Sama_1201	0.41	-0.4
1,474,159	+		Sama_1201	0.42	-0.0
1,474,205	+		Sama_1201	0.45	-2.7
1,474,205	+		Sama_1201	0.45	+0.4
1,474,205	+		Sama_1201	0.45	+1.4
1,474,205	+		Sama_1201	0.45	-0.6
1,474,205	+		Sama_1201	0.45	-1.2
1,474,205	+		Sama_1201	0.45	-0.0
1,474,206	-		Sama_1201	0.45	-0.9
1,474,206	-		Sama_1201	0.45	+1.2
1,474,206	-		Sama_1201	0.45	+1.0
1,474,206	-		Sama_1201	0.45	+1.3
1,474,206	-		Sama_1201	0.45	+2.2
1,474,209	+		Sama_1201	0.45	-1.6
1,474,209	+		Sama_1201	0.45	-1.9
1,474,209	+		Sama_1201	0.45	+2.4
1,474,210	-		Sama_1201	0.45	+2.7
1,474,210	-		Sama_1201	0.45	+1.2
1,474,210	-		Sama_1201	0.45	+1.0
1,474,254	+		Sama_1201	0.48	-1.4
1,474,254	+		Sama_1201	0.48	-2.0
1,474,255	-		Sama_1201	0.48	-1.9
1,474,255	-		Sama_1201	0.48	-0.7
1,474,274	-		Sama_1201	0.49	+0.6
1,474,300	+		Sama_1201	0.51	-1.6
1,474,301	-		Sama_1201	0.51	+1.1
1,474,301	-		Sama_1201	0.51	-1.6
1,474,301	-		Sama_1201	0.51	+1.7
1,474,301	-		Sama_1201	0.51	-2.9
1,474,321	+		Sama_1201	0.53	+0.1
1,474,322	-		Sama_1201	0.53	-1.4
1,474,322	-		Sama_1201	0.53	+3.4
1,474,346	-		Sama_1201	0.54	-1.0
1,474,372	+		Sama_1201	0.56	+0.1
1,474,372	+		Sama_1201	0.56	+0.4
1,474,372	+		Sama_1201	0.56	-0.6
1,474,372	+		Sama_1201	0.56	-1.4
1,474,373	-		Sama_1201	0.56	-0.0
1,474,373	-		Sama_1201	0.56	+1.8
1,474,373	-		Sama_1201	0.56	+2.7
1,474,373	-		Sama_1201	0.56	+0.3
1,474,373	-		Sama_1201	0.56	-0.9
1,474,373	-		Sama_1201	0.56	-1.6
1,474,384	+		Sama_1201	0.57	-0.4
1,474,429	+		Sama_1201	0.60	-3.0
1,474,429	+		Sama_1201	0.60	-1.0
1,474,430	-		Sama_1201	0.60	-0.0
1,474,437	+		Sama_1201	0.61	-1.9
1,474,437	+		Sama_1201	0.61	-0.6
1,474,438	-		Sama_1201	0.61	-1.0
1,474,442	-		Sama_1201	0.61	-1.9
1,474,442	-		Sama_1201	0.61	-2.1
1,474,495	+		Sama_1201	0.65	+1.0
1,474,495	+		Sama_1201	0.65	-1.0
1,474,495	+		Sama_1201	0.65	+1.0
1,474,495	+		Sama_1201	0.65	+1.2
1,474,496	-		Sama_1201	0.65	-1.6
1,474,496	-		Sama_1201	0.65	+1.3
1,474,501	+		Sama_1201	0.65	-2.6
1,474,576	+		Sama_1201	0.70	+0.3
1,474,576	+		Sama_1201	0.70	-0.8
1,474,576	+		Sama_1201	0.70	+0.2
1,474,576	+		Sama_1201	0.70	+0.3
1,474,576	+		Sama_1201	0.70	-1.9
1,474,576	+		Sama_1201	0.70	-1.9
1,474,576	+		Sama_1201	0.70	+0.8
1,474,596	+		Sama_1201	0.72	+1.3
1,474,596	+		Sama_1201	0.72	+2.0
1,474,597	-		Sama_1201	0.72	+0.7
1,474,597	-		Sama_1201	0.72	-1.0
1,474,644	+		Sama_1201	0.75	-0.0
1,474,692	+		Sama_1201	0.78	-0.6
1,474,708	+		Sama_1201	0.79	+2.5
1,474,708	+		Sama_1201	0.79	-0.6
1,474,709	-		Sama_1201	0.79	-1.0
1,474,759	+		Sama_1201	0.83	-0.5
1,474,759	+		Sama_1201	0.83	+2.2
1,474,771	-		Sama_1201	0.84	+1.4
1,474,771	-		Sama_1201	0.84	+1.4
1,474,783	+		Sama_1201	0.84	+2.1
1,474,798	+		Sama_1201	0.85	-1.7
1,474,799	-		Sama_1201	0.85	+3.5
1,474,803	+		Sama_1201	0.86	+1.2
1,474,803	+		Sama_1201	0.86	+0.3
1,474,849	-		Sama_1201	0.89	+2.6
1,474,906	+				-3.0
1,474,906	+				+1.0
1,474,906	+				-1.5
1,474,906	+				-2.7
1,474,906	+				-0.0
1,474,907	-				-1.2
1,474,929	-				-1.4
1,474,955	-				-2.2
1,474,997	+				+0.5
1,474,997	+				-1.6
1,475,013	+				-2.5
1,475,013	+				-1.2
1,475,013	+				-2.7
1,475,013	+				+0.2
1,475,090	+				+1.4
1,475,090	+				+2.8
1,475,090	+				+3.0
1,475,090	+				+0.8
1,475,091	-				-0.6
1,475,091	-				+1.0
1,475,091	-				-2.4
1,475,116	+				+0.7
1,475,116	+				+1.0
1,475,117	-				-0.1
1,475,132	+				-0.2
1,475,160	+		Sama_1202	0.11	+1.5
1,475,161	-		Sama_1202	0.11	-3.1
1,475,161	-		Sama_1202	0.11	+2.0
1,475,182	-		Sama_1202	0.14	-0.5
1,475,270	-		Sama_1202	0.23	-0.5
1,475,368	-		Sama_1202	0.33	+0.2
1,475,375	+		Sama_1202	0.33	+1.6
1,475,375	+		Sama_1202	0.33	+0.1
1,475,375	+		Sama_1202	0.33	+1.0
1,475,375	+		Sama_1202	0.33	-0.5
1,475,375	+		Sama_1202	0.33	+0.7
1,475,375	+		Sama_1202	0.33	+0.3
1,475,376	-		Sama_1202	0.33	-1.4
1,475,376	-		Sama_1202	0.33	+2.1
1,475,376	-		Sama_1202	0.33	-1.2
1,475,376	-		Sama_1202	0.33	+1.0
1,475,376	-		Sama_1202	0.33	-0.0
1,475,379	+		Sama_1202	0.34	-0.6
1,475,379	+		Sama_1202	0.34	-0.6
1,475,380	-		Sama_1202	0.34	+1.4
1,475,422	+		Sama_1202	0.38	-2.2
1,475,430	+		Sama_1202	0.39	-0.6
1,475,466	-		Sama_1202	0.43	+3.0
1,475,495	+		Sama_1202	0.46	+1.4
1,475,496	-		Sama_1202	0.46	+2.5
1,475,496	-		Sama_1202	0.46	-0.6
1,475,496	-		Sama_1202	0.46	+1.4
1,475,519	+		Sama_1202	0.48	-1.0
1,475,519	+		Sama_1202	0.48	-3.7
1,475,519	+		Sama_1202	0.48	+0.7
1,475,519	+		Sama_1202	0.48	+0.4
1,475,520	-		Sama_1202	0.48	+0.3
1,475,520	-		Sama_1202	0.48	-0.6
1,475,549	+		Sama_1202	0.51	+1.5
1,475,549	+		Sama_1202	0.51	+1.0
1,475,549	+		Sama_1202	0.51	+2.5
1,475,549	+		Sama_1202	0.51	-2.2
1,475,550	-		Sama_1202	0.51	-2.0
1,475,602	+		Sama_1202	0.57	-0.2
1,475,603	-		Sama_1202	0.57	+2.7
1,475,603	-		Sama_1202	0.57	-1.0
1,475,606	+		Sama_1202	0.57	-1.4
1,475,629	+		Sama_1202	0.59	-1.9
1,475,629	+		Sama_1202	0.59	+1.0
1,475,629	+		Sama_1202	0.59	+0.9
1,475,630	-		Sama_1202	0.59	-0.0
1,475,630	-		Sama_1202	0.59	+0.2
1,475,630	-		Sama_1202	0.59	+0.7
1,475,630	-		Sama_1202	0.59	-0.9
1,475,630	-		Sama_1202	0.59	-1.9
1,475,642	-		Sama_1202	0.61	+1.3
1,475,689	-		Sama_1202	0.66	-1.6
1,475,696	+		Sama_1202	0.66	-0.5
1,475,703	+		Sama_1202	0.67	-1.6
1,475,703	+		Sama_1202	0.67	-0.1
1,475,703	+		Sama_1202	0.67	-1.0
1,475,703	+		Sama_1202	0.67	+2.0
1,475,703	+		Sama_1202	0.67	+0.8
1,475,703	+		Sama_1202	0.67	+2.5
1,475,703	+		Sama_1202	0.67	+1.6
1,475,703	+		Sama_1202	0.67	+1.4
1,475,704	-		Sama_1202	0.67	-2.7
1,475,704	-		Sama_1202	0.67	-2.4
1,475,704	-		Sama_1202	0.67	-0.0
1,475,704	-		Sama_1202	0.67	-1.5
1,475,704	-		Sama_1202	0.67	-0.9
1,475,704	-		Sama_1202	0.67	+1.2
1,475,704	-		Sama_1202	0.67	+1.3
1,475,704	-		Sama_1202	0.67	+1.5
1,475,704	-		Sama_1202	0.67	+2.4
1,475,704	-		Sama_1202	0.67	+1.4
1,475,704	-		Sama_1202	0.67	+0.7
1,475,705	+		Sama_1202	0.67	+0.4
1,475,705	+		Sama_1202	0.67	-2.0
1,475,705	+		Sama_1202	0.67	+1.1
1,475,705	+		Sama_1202	0.67	-0.0
1,475,705	+		Sama_1202	0.67	+0.1
1,475,705	+		Sama_1202	0.67	+0.9
1,475,705	+		Sama_1202	0.67	+0.3
1,475,706	-		Sama_1202	0.67	-2.2
1,475,706	-		Sama_1202	0.67	-2.3
1,475,706	-		Sama_1202	0.67	-1.4
1,475,706	-		Sama_1202	0.67	-2.7
1,475,706	-		Sama_1202	0.67	+0.5
1,475,706	-		Sama_1202	0.67	+1.5
1,475,706	-		Sama_1202	0.67	+0.4
1,475,764	+		Sama_1202	0.73	-0.9
1,475,765	-		Sama_1202	0.73	+2.0
1,475,768	+		Sama_1202	0.74	-3.3
1,475,768	+		Sama_1202	0.74	+1.9
1,475,768	+		Sama_1202	0.74	+1.2
1,475,769	-		Sama_1202	0.74	-1.9
1,475,769	-		Sama_1202	0.74	-1.0
1,475,769	-		Sama_1202	0.74	+2.0
1,475,769	-		Sama_1202	0.74	-0.0
1,475,795	+		Sama_1202	0.76	-1.6
1,475,795	+		Sama_1202	0.76	+0.6
1,475,795	+		Sama_1202	0.76	+1.3
1,475,795	+		Sama_1202	0.76	-0.0
1,475,796	-		Sama_1202	0.77	+4.8
1,475,802	+		Sama_1202	0.77	-0.3
1,475,803	-		Sama_1202	0.77	-0.6
1,475,804	+		Sama_1202	0.77	+0.7
1,475,805	-		Sama_1202	0.77	+1.4
1,475,805	-		Sama_1202	0.77	-1.6
1,475,818	+		Sama_1202	0.79	+2.2
1,475,829	+		Sama_1202	0.80	+2.4
1,475,829	+		Sama_1202	0.80	-0.3
1,475,829	+		Sama_1202	0.80	+2.0
1,475,830	-		Sama_1202	0.80	-0.0
1,475,830	-		Sama_1202	0.80	+1.2
1,475,869	+		Sama_1202	0.84	-1.3
1,475,870	-		Sama_1202	0.84	+3.8
1,475,907	+		Sama_1202	0.88	-1.6
1,475,908	-		Sama_1202	0.88	-0.0
1,475,989	+				-0.6
1,475,989	+				-1.2
1,475,989	+				-0.5
1,475,989	+				-1.6
1,475,989	+				+1.0
1,475,989	+				+2.4
1,475,989	+				+0.2
1,475,989	+				+1.2
1,475,989	+				+1.6
1,475,990	-				-1.4
1,475,990	-				-0.5
1,475,990	-				+0.2
1,475,990	-				-2.4
1,475,990	-				-1.0
1,476,008	+				-1.0
1,476,052	+				-1.0
1,476,052	+				+2.3
1,476,052	+				-2.0
1,476,055	+				+0.8
1,476,055	+				-0.1
1,476,055	+				-2.4
1,476,056	-				-0.9
1,476,062	-				-1.0
1,476,101	+				+0.7
1,476,101	+				-1.3
1,476,221	+		Sama_1203	0.27	+1.6
1,476,221	+		Sama_1203	0.27	+2.0
1,476,221	+		Sama_1203	0.27	-2.2
1,476,230	+		Sama_1203	0.29	-0.8
1,476,230	+		Sama_1203	0.29	+2.3
1,476,231	-		Sama_1203	0.29	+2.4
1,476,259	+		Sama_1203	0.34	+1.4
1,476,259	+		Sama_1203	0.34	-0.0
1,476,259	+		Sama_1203	0.34	-0.0
1,476,260	-		Sama_1203	0.34	+0.7
1,476,433	+		Sama_1203	0.63	+0.4
1,476,433	+		Sama_1203	0.63	+3.3
1,476,433	+		Sama_1203	0.63	+0.1
1,476,434	-		Sama_1203	0.63	+1.1
1,476,446	+		Sama_1203	0.65	-2.4
1,476,446	+		Sama_1203	0.65	+0.2
1,476,446	+		Sama_1203	0.65	-1.6
1,476,446	+		Sama_1203	0.65	-0.3
1,476,446	+		Sama_1203	0.65	+0.6
1,476,447	-		Sama_1203	0.65	-1.1
1,476,447	-		Sama_1203	0.65	-2.2
1,476,450	+		Sama_1203	0.66	+1.0
1,476,450	+		Sama_1203	0.66	+0.3
1,476,450	+		Sama_1203	0.66	+1.0
1,476,450	+		Sama_1203	0.66	+2.8
1,476,573	+		Sama_1203	0.86	-2.0
1,476,606	+				-3.2
1,476,607	-				-0.1
1,476,607	-				+1.1
1,476,607	-				-1.2
1,476,607	-				+0.1
1,476,607	-				-1.9
1,476,607	-				-0.4
1,476,681	+				-1.0
1,476,681	+				-0.2
1,476,682	-				+0.7
1,476,682	-				-1.6
1,476,682	-				-0.0
1,476,682	-				+1.9
1,476,682	-				+0.7
1,476,682	-				+1.0
1,476,684	+				-0.0
1,476,684	+				+0.5
1,476,685	-				-1.5
1,476,729	+		Sama_1204	0.14	-0.4
1,476,729	+		Sama_1204	0.14	-0.8
1,476,729	+		Sama_1204	0.14	-0.2
1,476,729	+		Sama_1204	0.14	+4.0
1,476,730	-		Sama_1204	0.14	-0.0
1,476,730	-		Sama_1204	0.14	+3.4
1,476,730	-		Sama_1204	0.14	-0.0
1,476,730	-		Sama_1204	0.14	-1.0
1,476,734	-		Sama_1204	0.15	+0.1
1,476,751	+		Sama_1204	0.18	-2.4
1,476,751	+		Sama_1204	0.18	-0.9
1,476,752	-		Sama_1204	0.18	+0.6
1,476,752	-		Sama_1204	0.18	-2.4
1,476,752	-		Sama_1204	0.18	-0.6
1,476,752	-		Sama_1204	0.18	+1.7
1,476,775	+		Sama_1204	0.22	-0.3
1,476,775	+		Sama_1204	0.22	+0.6
1,476,802	+		Sama_1204	0.27	+1.9
1,476,802	+		Sama_1204	0.27	-2.7
1,476,803	-		Sama_1204	0.27	-0.4
1,476,803	-		Sama_1204	0.27	+1.1
1,476,819	-		Sama_1204	0.30	-0.0
1,476,958	+		Sama_1204	0.55	+1.0
1,476,970	+		Sama_1204	0.57	+1.3
1,476,971	-		Sama_1204	0.57	+2.5
1,476,974	+		Sama_1204	0.58	-1.0
1,476,974	+		Sama_1204	0.58	+0.4
1,476,974	+		Sama_1204	0.58	-0.9
1,476,974	+		Sama_1204	0.58	+1.0
1,476,974	+		Sama_1204	0.58	+1.4
1,476,974	+		Sama_1204	0.58	+1.2
1,476,975	-		Sama_1204	0.58	-1.0
1,476,975	-		Sama_1204	0.58	+1.3
1,476,975	-		Sama_1204	0.58	+0.3
1,476,975	-		Sama_1204	0.58	-1.0
1,476,975	-		Sama_1204	0.58	-0.4
1,476,975	-		Sama_1204	0.58	-1.4
1,476,975	-		Sama_1204	0.58	-0.4
1,476,975	-		Sama_1204	0.58	+1.3
1,476,975	-		Sama_1204	0.58	-0.8
1,476,975	-		Sama_1204	0.58	+2.1