Strain Fitness in Shewanella amazonensis SB2B around Sama_1062

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,285,742	-		Sama_1061	0.60	+3.4
1,285,742	-		Sama_1061	0.60	-2.4
1,285,742	-		Sama_1061	0.60	+0.4
1,285,777	+		Sama_1061	0.61	+3.0
1,285,778	-		Sama_1061	0.61	-0.4
1,285,778	-		Sama_1061	0.61	+2.4
1,285,778	-		Sama_1061	0.61	-2.5
1,285,778	-		Sama_1061	0.61	-2.3
1,285,780	+		Sama_1061	0.61	+6.4
1,285,780	+		Sama_1061	0.61	+2.0
1,285,810	+		Sama_1061	0.63	+0.7
1,285,810	+		Sama_1061	0.63	-1.8
1,285,810	+		Sama_1061	0.63	-2.5
1,285,810	+		Sama_1061	0.63	-1.6
1,285,810	+		Sama_1061	0.63	+1.0
1,285,810	+		Sama_1061	0.63	+1.0
1,285,810	+		Sama_1061	0.63	-1.8
1,285,811	-		Sama_1061	0.63	-1.3
1,285,811	-		Sama_1061	0.63	-1.6
1,285,813	+		Sama_1061	0.63	+2.9
1,285,919	-		Sama_1061	0.67	-1.3
1,285,919	-		Sama_1061	0.67	-0.6
1,285,919	-		Sama_1061	0.67	+0.5
1,285,919	-		Sama_1061	0.67	+1.4
1,285,919	-		Sama_1061	0.67	+0.8
1,285,957	+		Sama_1061	0.69	+1.0
1,285,957	+		Sama_1061	0.69	-1.6
1,285,958	-		Sama_1061	0.69	-2.2
1,285,974	-		Sama_1061	0.70	-1.3
1,285,974	-		Sama_1061	0.70	-0.2
1,286,033	-		Sama_1061	0.72	-0.8
1,286,033	-		Sama_1061	0.72	+0.8
1,286,033	-		Sama_1061	0.72	-1.5
1,286,043	+		Sama_1061	0.73	-2.7
1,286,043	+		Sama_1061	0.73	-1.6
1,286,043	+		Sama_1061	0.73	-1.3
1,286,065	+		Sama_1061	0.74	-1.3
1,286,066	-		Sama_1061	0.74	+2.0
1,286,066	-		Sama_1061	0.74	-2.5
1,286,066	-		Sama_1061	0.74	+0.1
1,286,066	-		Sama_1061	0.74	+2.7
1,286,066	-		Sama_1061	0.74	-2.3
1,286,068	+		Sama_1061	0.74	-2.5
1,286,068	+		Sama_1061	0.74	+2.5
1,286,068	+		Sama_1061	0.74	+3.0
1,286,069	-		Sama_1061	0.74	+0.7
1,286,075	+		Sama_1061	0.74	-0.6
1,286,076	-		Sama_1061	0.74	-1.1
1,286,378	+		Sama_1061	0.87	+3.1
1,286,385	+		Sama_1061	0.88	-2.2
1,286,386	-		Sama_1061	0.88	+2.0
1,286,387	+		Sama_1061	0.88	+1.8
1,286,388	-		Sama_1061	0.88	+1.1
1,286,388	-		Sama_1061	0.88	+1.2
1,286,422	+		Sama_1061	0.89	-2.2
1,286,422	+		Sama_1061	0.89	+1.0
1,286,423	-		Sama_1061	0.89	+1.6
1,286,423	-		Sama_1061	0.89	+2.1
1,286,423	-		Sama_1061	0.89	-1.6
1,286,423	-		Sama_1061	0.89	+1.0
1,286,425	+		Sama_1061	0.89	+0.2
1,286,425	+		Sama_1061	0.89	-1.4
1,286,425	+		Sama_1061	0.89	-2.5
1,286,425	+		Sama_1061	0.89	-1.3
1,286,425	+		Sama_1061	0.89	+2.0
1,286,426	-		Sama_1061	0.89	+1.2
1,286,426	-		Sama_1061	0.89	+2.7
1,286,426	-		Sama_1061	0.89	-1.6
1,286,426	-		Sama_1061	0.89	-1.6
1,286,426	-		Sama_1061	0.89	-2.5
1,286,426	-		Sama_1061	0.89	+1.2
1,286,426	-		Sama_1061	0.89	-2.0
1,286,426	-		Sama_1061	0.89	-1.8
1,286,426	-		Sama_1061	0.89	+0.9
1,286,426	-		Sama_1061	0.89	-0.9
1,286,426	-		Sama_1061	0.89	+2.5
1,286,426	-		Sama_1061	0.89	+3.1
1,286,665	+				+0.9
1,286,665	+				-1.8
1,286,665	+				-1.1
1,286,666	-				+0.7
1,286,666	-				+1.1
1,286,666	-				-0.6
1,286,666	-				+0.3
1,286,666	-				-0.3
1,286,671	+				+1.1
1,286,671	+				+2.0
1,286,671	+				+0.6
1,286,671	+				+1.0
1,286,671	+				-2.0
1,286,672	-				-1.3
1,286,672	-				+1.9
1,286,672	-				+0.6
1,286,672	-				-0.4
1,286,672	-				-1.8
1,286,686	+				+1.1
1,286,686	+				-3.1
1,286,697	+				-1.0
1,286,698	-				+1.2
1,286,722	-				+1.2
1,286,722	-				-1.6
1,286,728	+				-0.1
1,286,729	-				-2.6
1,286,729	-				+0.7
1,286,756	+				+0.4
1,286,760	+				+1.6
1,286,760	+				-0.7
1,286,760	+				+1.2
1,286,760	+				-1.6
1,286,760	+				-1.8
1,286,760	+				-0.4
1,286,760	+				-1.6
1,286,760	+				+0.5
1,286,760	+				-0.6
1,286,760	+				-1.6
1,286,760	+				+2.0
1,286,761	-				+1.7
1,286,761	-				-1.8
1,286,761	-				-1.6
1,286,761	-				-1.3
1,286,761	-				-1.2
1,286,761	-				-0.0
1,286,761	-				-0.5
1,286,761	-				-0.6
1,286,761	-				-1.3
1,286,761	-				+3.4
1,286,911	+		Sama_1062	0.15	+1.0
1,286,911	+		Sama_1062	0.15	-1.0
1,286,911	+		Sama_1062	0.15	-1.0
1,286,912	-		Sama_1062	0.16	-0.8
1,286,912	-		Sama_1062	0.16	-3.3
1,286,912	-		Sama_1062	0.16	+2.0
1,286,912	-		Sama_1062	0.16	-0.6
1,286,971	+		Sama_1062	0.20	-0.2
1,286,971	+		Sama_1062	0.20	+1.7
1,287,068	+		Sama_1062	0.27	+0.5
1,287,069	-		Sama_1062	0.27	-2.9
1,287,069	-		Sama_1062	0.27	-3.9
1,287,069	-		Sama_1062	0.27	-0.6
1,287,116	+		Sama_1062	0.31	-0.8
1,287,116	+		Sama_1062	0.31	-2.7
1,287,117	-		Sama_1062	0.31	-0.6
1,287,126	+		Sama_1062	0.32	-0.6
1,287,185	+		Sama_1062	0.36	-1.0
1,287,234	+		Sama_1062	0.40	-3.6
1,287,242	+		Sama_1062	0.41	+0.9
1,287,243	-		Sama_1062	0.41	-1.3
1,287,328	-		Sama_1062	0.47	-1.8
1,287,355	-		Sama_1062	0.49	-0.6
1,287,403	-		Sama_1062	0.53	-0.0
1,287,411	+		Sama_1062	0.53	-2.2
1,287,412	-		Sama_1062	0.54	-1.0
1,287,412	-		Sama_1062	0.54	-2.8
1,287,433	-		Sama_1062	0.55	-1.3
1,287,488	-		Sama_1062	0.59	-2.6
1,287,517	+		Sama_1062	0.62	-0.0
1,287,517	+		Sama_1062	0.62	-0.2
1,287,540	+		Sama_1062	0.63	-3.0
1,287,567	+		Sama_1062	0.65	+1.2
1,287,567	+		Sama_1062	0.65	-0.6
1,287,568	-		Sama_1062	0.65	-1.6
1,287,744	-		Sama_1062	0.79	-1.8
1,287,746	+		Sama_1062	0.79	-1.8
1,287,746	+		Sama_1062	0.79	-2.2
1,287,747	-		Sama_1062	0.79	-2.8
1,287,759	-		Sama_1062	0.80	-1.0
1,287,770	+		Sama_1062	0.81	-2.6
1,287,770	+		Sama_1062	0.81	+1.0
1,287,770	+		Sama_1062	0.81	-2.3
1,287,771	-		Sama_1062	0.81	-1.0
1,287,790	+		Sama_1062	0.82	-0.2
1,287,830	+		Sama_1062	0.85	-1.0
1,287,830	+		Sama_1062	0.85	-2.0
1,287,830	+		Sama_1062	0.85	-2.3
1,287,869	-		Sama_1062	0.88	-0.3
1,287,937	+				-1.3
1,287,972	+				-0.0
1,287,972	+				-0.8
1,287,973	-				-2.0
1,287,974	+				-2.0
1,287,974	+				-2.3
1,287,975	-				-0.8
1,287,975	-				-2.3
1,288,066	+				+1.2
1,288,066	+				-1.2
1,288,108	+				+0.5
1,288,109	-				-1.1
1,288,130	+				+0.6
1,288,131	-				-1.7
1,288,157	+				-1.8
1,288,222	+		Sama_1063	0.14	+1.0
1,288,308	+		Sama_1063	0.22	-2.5
1,288,308	+		Sama_1063	0.22	-0.0
1,288,309	-		Sama_1063	0.22	+2.2
1,288,309	-		Sama_1063	0.22	-0.6
1,288,353	+		Sama_1063	0.27	-2.3
1,288,354	-		Sama_1063	0.27	-0.4
1,288,370	+		Sama_1063	0.28	-1.3
1,288,371	-		Sama_1063	0.28	-1.0
1,288,403	+		Sama_1063	0.31	-0.6
1,288,403	+		Sama_1063	0.31	+1.0
1,288,403	+		Sama_1063	0.31	-2.6
1,288,404	-		Sama_1063	0.31	-1.8
1,288,404	-		Sama_1063	0.31	-0.0
1,288,404	-		Sama_1063	0.31	+0.1
1,288,404	-		Sama_1063	0.31	+0.5
1,288,480	+		Sama_1063	0.38	+0.6
1,288,480	+		Sama_1063	0.38	+0.6
1,288,480	+		Sama_1063	0.38	-0.4
1,288,480	+		Sama_1063	0.38	-2.6
1,288,480	+		Sama_1063	0.38	-2.2
1,288,480	+		Sama_1063	0.38	-3.0
1,288,480	+		Sama_1063	0.38	-3.0
1,288,481	-		Sama_1063	0.38	-1.3
1,288,481	-		Sama_1063	0.38	-0.3
1,288,481	-		Sama_1063	0.38	-0.1
1,288,481	-		Sama_1063	0.38	+0.3
1,288,481	-		Sama_1063	0.38	-1.0
1,288,481	-		Sama_1063	0.38	+0.2
1,288,484	+		Sama_1063	0.39	+0.3
1,288,484	+		Sama_1063	0.39	+0.5
1,288,484	+		Sama_1063	0.39	-2.5
1,288,484	+		Sama_1063	0.39	-1.1
1,288,484	+		Sama_1063	0.39	+2.6
1,288,485	-		Sama_1063	0.39	+2.2
1,288,485	-		Sama_1063	0.39	-1.8
1,288,485	-		Sama_1063	0.39	-0.6
1,288,485	-		Sama_1063	0.39	+0.0
1,288,485	-		Sama_1063	0.39	+1.0
1,288,485	-		Sama_1063	0.39	+1.0
1,288,485	-		Sama_1063	0.39	-1.6
1,288,798	+		Sama_1063	0.67	-0.9
1,288,798	+		Sama_1063	0.67	-0.3
1,288,798	+		Sama_1063	0.67	-1.8
1,288,808	-		Sama_1063	0.68	+0.2
1,288,808	-		Sama_1063	0.68	-1.0
1,288,865	+		Sama_1063	0.74	-2.2
1,288,865	+		Sama_1063	0.74	-0.0
1,288,866	-		Sama_1063	0.74	-0.2
1,288,866	-		Sama_1063	0.74	-1.3
1,288,866	-		Sama_1063	0.74	-2.1
1,288,866	-		Sama_1063	0.74	-1.0
1,288,894	+		Sama_1063	0.76	-0.8