Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0475 and Sama_0476 are separated by 110 nucleotides Sama_0476 and Sama_0477 are separated by 460 nucleotides
Sama_0475: Sama_0475 - putative oxidoreductase (RefSeq), at 585,205 to 586,251
_0475
Sama_0476: Sama_0476 - TetR family transcriptional regulator (RefSeq), at 586,362 to 586,952
_0476
Sama_0477: Sama_0477 - outer membrane efflux protein (RefSeq), at 587,413 to 588,966
_0477
Position (kb) 586
587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 585.380 kb on + strand, within Sama_0475 at 585.392 kb on + strand, within Sama_0475 at 585.393 kb on - strand, within Sama_0475 at 585.497 kb on + strand, within Sama_0475 at 585.497 kb on + strand, within Sama_0475 at 585.497 kb on + strand, within Sama_0475 at 585.537 kb on + strand, within Sama_0475 at 585.550 kb on + strand, within Sama_0475 at 585.550 kb on + strand, within Sama_0475 at 585.551 kb on - strand, within Sama_0475 at 585.551 kb on - strand, within Sama_0475 at 585.551 kb on - strand, within Sama_0475 at 585.552 kb on + strand, within Sama_0475 at 585.552 kb on + strand, within Sama_0475 at 585.552 kb on + strand, within Sama_0475 at 585.552 kb on + strand, within Sama_0475 at 585.552 kb on + strand, within Sama_0475 at 585.552 kb on + strand, within Sama_0475 at 585.552 kb on + strand, within Sama_0475 at 585.553 kb on - strand, within Sama_0475 at 585.553 kb on - strand, within Sama_0475 at 585.553 kb on - strand, within Sama_0475 at 585.553 kb on - strand, within Sama_0475 at 585.553 kb on - strand, within Sama_0475 at 585.590 kb on + strand, within Sama_0475 at 585.590 kb on + strand, within Sama_0475 at 585.590 kb on + strand, within Sama_0475 at 585.591 kb on - strand, within Sama_0475 at 585.591 kb on - strand, within Sama_0475 at 585.591 kb on - strand, within Sama_0475 at 585.591 kb on - strand, within Sama_0475 at 585.658 kb on - strand, within Sama_0475 at 585.796 kb on + strand, within Sama_0475 at 585.796 kb on + strand, within Sama_0475 at 585.842 kb on + strand, within Sama_0475 at 585.842 kb on + strand, within Sama_0475 at 585.842 kb on + strand, within Sama_0475 at 585.843 kb on - strand, within Sama_0475 at 585.843 kb on - strand, within Sama_0475 at 585.843 kb on - strand, within Sama_0475 at 585.862 kb on - strand, within Sama_0475 at 585.862 kb on - strand, within Sama_0475 at 585.881 kb on + strand, within Sama_0475 at 585.881 kb on + strand, within Sama_0475 at 585.881 kb on + strand, within Sama_0475 at 585.882 kb on - strand, within Sama_0475 at 585.913 kb on - strand, within Sama_0475 at 585.941 kb on + strand, within Sama_0475 at 585.941 kb on + strand, within Sama_0475 at 585.941 kb on + strand, within Sama_0475 at 585.941 kb on + strand, within Sama_0475 at 585.942 kb on - strand, within Sama_0475 at 585.942 kb on - strand, within Sama_0475 at 585.942 kb on - strand, within Sama_0475 at 585.942 kb on - strand, within Sama_0475 at 585.942 kb on - strand, within Sama_0475 at 585.962 kb on + strand, within Sama_0475 at 586.086 kb on + strand, within Sama_0475 at 586.086 kb on + strand, within Sama_0475 at 586.086 kb on + strand, within Sama_0475 at 586.100 kb on + strand, within Sama_0475 at 586.100 kb on + strand, within Sama_0475 at 586.101 kb on - strand, within Sama_0475 at 586.101 kb on - strand, within Sama_0475 at 586.101 kb on - strand, within Sama_0475 at 586.101 kb on - strand, within Sama_0475 at 586.101 kb on - strand, within Sama_0475 at 586.101 kb on - strand, within Sama_0475 at 586.101 kb on - strand, within Sama_0475 at 586.101 kb on - strand, within Sama_0475 at 586.101 kb on - strand, within Sama_0475 at 586.118 kb on + strand, within Sama_0475 at 586.118 kb on + strand, within Sama_0475 at 586.118 kb on + strand, within Sama_0475 at 586.118 kb on + strand, within Sama_0475 at 586.118 kb on + strand, within Sama_0475 at 586.118 kb on + strand, within Sama_0475 at 586.118 kb on + strand, within Sama_0475 at 586.118 kb on + strand, within Sama_0475 at 586.119 kb on - strand, within Sama_0475 at 586.119 kb on - strand, within Sama_0475 at 586.119 kb on - strand, within Sama_0475 at 586.119 kb on - strand, within Sama_0475 at 586.119 kb on - strand, within Sama_0475 at 586.119 kb on - strand, within Sama_0475 at 586.251 kb on + strand at 586.251 kb on + strand at 586.251 kb on + strand at 586.251 kb on + strand at 586.251 kb on + strand at 586.251 kb on + strand at 586.251 kb on + strand at 586.251 kb on + strand at 586.251 kb on + strand at 586.251 kb on + strand at 586.252 kb on - strand at 586.252 kb on - strand at 586.252 kb on - strand at 586.252 kb on - strand at 586.257 kb on + strand at 586.258 kb on - strand at 586.258 kb on - strand at 586.319 kb on - strand at 586.338 kb on + strand at 586.338 kb on + strand at 586.338 kb on + strand at 586.338 kb on + strand at 586.338 kb on + strand at 586.343 kb on + strand at 586.344 kb on - strand at 586.344 kb on - strand at 586.344 kb on - strand at 586.377 kb on + strand at 586.378 kb on - strand at 586.378 kb on - strand at 586.381 kb on - strand at 586.381 kb on - strand at 586.381 kb on - strand at 586.381 kb on - strand at 586.432 kb on - strand, within Sama_0476 at 586.432 kb on - strand, within Sama_0476 at 586.432 kb on - strand, within Sama_0476 at 586.469 kb on - strand, within Sama_0476 at 586.469 kb on - strand, within Sama_0476 at 586.469 kb on - strand, within Sama_0476 at 586.497 kb on - strand, within Sama_0476 at 586.507 kb on - strand, within Sama_0476 at 586.555 kb on - strand, within Sama_0476 at 586.555 kb on - strand, within Sama_0476 at 586.555 kb on - strand, within Sama_0476 at 586.555 kb on - strand, within Sama_0476 at 586.555 kb on - strand, within Sama_0476 at 586.555 kb on - strand, within Sama_0476 at 586.612 kb on - strand, within Sama_0476 at 586.633 kb on - strand, within Sama_0476 at 586.633 kb on - strand, within Sama_0476 at 586.691 kb on - strand, within Sama_0476 at 586.691 kb on - strand, within Sama_0476 at 586.709 kb on - strand, within Sama_0476 at 586.756 kb on + strand, within Sama_0476 at 586.757 kb on - strand, within Sama_0476 at 586.768 kb on + strand, within Sama_0476 at 586.769 kb on - strand, within Sama_0476 at 586.769 kb on - strand, within Sama_0476 at 586.769 kb on - strand, within Sama_0476 at 586.769 kb on - strand, within Sama_0476 at 586.769 kb on - strand, within Sama_0476 at 586.813 kb on + strand, within Sama_0476 at 586.814 kb on - strand, within Sama_0476 at 586.814 kb on - strand, within Sama_0476 at 586.819 kb on + strand, within Sama_0476 at 586.820 kb on - strand, within Sama_0476 at 586.820 kb on - strand, within Sama_0476 at 586.820 kb on - strand, within Sama_0476 at 586.820 kb on - strand, within Sama_0476 at 586.820 kb on - strand, within Sama_0476 at 586.820 kb on - strand, within Sama_0476 at 586.820 kb on - strand, within Sama_0476 at 586.820 kb on - strand, within Sama_0476 at 586.820 kb on - strand, within Sama_0476 at 586.820 kb on - strand, within Sama_0476 at 586.909 kb on - strand at 586.909 kb on - strand at 586.909 kb on - strand at 586.909 kb on - strand at 586.909 kb on - strand at 586.909 kb on - strand at 586.909 kb on - strand at 586.909 kb on - strand at 586.909 kb on - strand at 586.909 kb on - strand at 586.918 kb on - strand at 586.918 kb on - strand at 586.918 kb on - strand at 586.918 kb on - strand at 586.918 kb on - strand at 586.946 kb on + strand at 586.961 kb on + strand at 586.962 kb on - strand at 586.962 kb on - strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.059 kb on + strand at 587.060 kb on - strand at 587.060 kb on - strand at 587.060 kb on - strand at 587.060 kb on - strand at 587.060 kb on - strand at 587.060 kb on - strand at 587.079 kb on + strand at 587.080 kb on - strand at 587.080 kb on - strand at 587.080 kb on - strand at 587.096 kb on + strand at 587.135 kb on + strand at 587.170 kb on + strand at 587.262 kb on + strand at 587.262 kb on + strand at 587.262 kb on + strand at 587.330 kb on + strand at 587.330 kb on + strand at 587.331 kb on - strand at 587.338 kb on + strand at 587.338 kb on + strand at 587.338 kb on + strand at 587.339 kb on - strand at 587.367 kb on + strand at 587.391 kb on + strand at 587.391 kb on + strand at 587.391 kb on + strand at 587.392 kb on - strand at 587.392 kb on - strand at 587.417 kb on + strand at 587.417 kb on + strand at 587.417 kb on + strand at 587.417 kb on + strand at 587.418 kb on - strand at 587.418 kb on - strand at 587.437 kb on - strand at 587.469 kb on + strand at 587.469 kb on + strand at 587.469 kb on + strand at 587.470 kb on - strand at 587.470 kb on - strand at 587.559 kb on + strand at 587.560 kb on - strand at 587.560 kb on - strand at 587.601 kb on + strand, within Sama_0477 at 587.601 kb on + strand, within Sama_0477 at 587.601 kb on + strand, within Sama_0477 at 587.601 kb on + strand, within Sama_0477 at 587.601 kb on + strand, within Sama_0477 at 587.601 kb on + strand, within Sama_0477 at 587.601 kb on + strand, within Sama_0477 at 587.601 kb on + strand, within Sama_0477 at 587.602 kb on - strand, within Sama_0477 at 587.676 kb on + strand, within Sama_0477 at 587.773 kb on + strand, within Sama_0477 at 587.773 kb on + strand, within Sama_0477 at 587.773 kb on + strand, within Sama_0477 at 587.773 kb on + strand, within Sama_0477 at 587.773 kb on + strand, within Sama_0477 at 587.773 kb on + strand, within Sama_0477 at 587.773 kb on + strand, within Sama_0477 at 587.774 kb on - strand, within Sama_0477 at 587.774 kb on - strand, within Sama_0477 at 587.774 kb on - strand, within Sama_0477 at 587.774 kb on - strand, within Sama_0477 at 587.775 kb on + strand, within Sama_0477 at 587.775 kb on + strand, within Sama_0477 at 587.775 kb on + strand, within Sama_0477 at 587.776 kb on - strand, within Sama_0477 at 587.823 kb on + strand, within Sama_0477 at 587.824 kb on - strand, within Sama_0477 at 587.881 kb on - strand, within Sama_0477 at 587.898 kb on + strand, within Sama_0477 at 587.899 kb on - strand, within Sama_0477 at 587.899 kb on - strand, within Sama_0477 at 587.899 kb on - strand, within Sama_0477 at 587.899 kb on - strand, within Sama_0477 at 587.901 kb on + strand, within Sama_0477 at 587.901 kb on + strand, within Sama_0477 at 587.901 kb on + strand, within Sama_0477 at 587.901 kb on + strand, within Sama_0477 at 587.901 kb on + strand, within Sama_0477 at 587.902 kb on - strand, within Sama_0477 at 587.902 kb on - strand, within Sama_0477
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 585,380 + Sama_0475 0.17 +1.0 585,392 + Sama_0475 0.18 +1.4 585,393 - Sama_0475 0.18 +3.3 585,497 + Sama_0475 0.28 +0.6 585,497 + Sama_0475 0.28 +1.7 585,497 + Sama_0475 0.28 -0.5 585,537 + Sama_0475 0.32 +2.5 585,550 + Sama_0475 0.33 +0.7 585,550 + Sama_0475 0.33 -2.4 585,551 - Sama_0475 0.33 -1.9 585,551 - Sama_0475 0.33 -1.2 585,551 - Sama_0475 0.33 +0.1 585,552 + Sama_0475 0.33 -0.6 585,552 + Sama_0475 0.33 +0.9 585,552 + Sama_0475 0.33 -1.1 585,552 + Sama_0475 0.33 +0.2 585,552 + Sama_0475 0.33 -2.2 585,552 + Sama_0475 0.33 +0.9 585,552 + Sama_0475 0.33 +2.1 585,553 - Sama_0475 0.33 +0.9 585,553 - Sama_0475 0.33 +0.2 585,553 - Sama_0475 0.33 -1.6 585,553 - Sama_0475 0.33 +0.7 585,553 - Sama_0475 0.33 -0.8 585,590 + Sama_0475 0.37 +2.5 585,590 + Sama_0475 0.37 +0.2 585,590 + Sama_0475 0.37 -0.3 585,591 - Sama_0475 0.37 -2.9 585,591 - Sama_0475 0.37 -0.4 585,591 - Sama_0475 0.37 -1.8 585,591 - Sama_0475 0.37 -1.4 585,658 - Sama_0475 0.43 +1.0 585,796 + Sama_0475 0.56 -1.0 585,796 + Sama_0475 0.56 -1.6 585,842 + Sama_0475 0.61 -2.6 585,842 + Sama_0475 0.61 -0.8 585,842 + Sama_0475 0.61 +1.8 585,843 - Sama_0475 0.61 -2.4 585,843 - Sama_0475 0.61 +1.2 585,843 - Sama_0475 0.61 +0.2 585,862 - Sama_0475 0.63 -0.1 585,862 - Sama_0475 0.63 +1.0 585,881 + Sama_0475 0.65 +1.5 585,881 + Sama_0475 0.65 -1.4 585,881 + Sama_0475 0.65 +1.4 585,882 - Sama_0475 0.65 -0.8 585,913 - Sama_0475 0.68 -1.1 585,941 + Sama_0475 0.70 -0.4 585,941 + Sama_0475 0.70 +0.4 585,941 + Sama_0475 0.70 +2.1 585,941 + Sama_0475 0.70 +0.2 585,942 - Sama_0475 0.70 -2.9 585,942 - Sama_0475 0.70 -0.1 585,942 - Sama_0475 0.70 -0.4 585,942 - Sama_0475 0.70 +0.9 585,942 - Sama_0475 0.70 -0.6 585,962 + Sama_0475 0.72 -0.5 586,086 + Sama_0475 0.84 -0.6 586,086 + Sama_0475 0.84 +0.4 586,086 + Sama_0475 0.84 -1.8 586,100 + Sama_0475 0.85 -0.2 586,100 + Sama_0475 0.85 -0.7 586,101 - Sama_0475 0.86 +0.2 586,101 - Sama_0475 0.86 +0.4 586,101 - Sama_0475 0.86 +0.5 586,101 - Sama_0475 0.86 -3.2 586,101 - Sama_0475 0.86 -0.2 586,101 - Sama_0475 0.86 -1.2 586,101 - Sama_0475 0.86 +2.6 586,101 - Sama_0475 0.86 -1.9 586,101 - Sama_0475 0.86 +1.6 586,118 + Sama_0475 0.87 -0.4 586,118 + Sama_0475 0.87 +1.1 586,118 + Sama_0475 0.87 -0.8 586,118 + Sama_0475 0.87 +1.5 586,118 + Sama_0475 0.87 -1.6 586,118 + Sama_0475 0.87 +0.9 586,118 + Sama_0475 0.87 -2.2 586,118 + Sama_0475 0.87 -2.5 586,119 - Sama_0475 0.87 -1.1 586,119 - Sama_0475 0.87 -1.3 586,119 - Sama_0475 0.87 +1.2 586,119 - Sama_0475 0.87 -0.8 586,119 - Sama_0475 0.87 -0.7 586,119 - Sama_0475 0.87 -1.3 586,251 + +0.2 586,251 + +0.4 586,251 + +0.8 586,251 + +0.2 586,251 + -1.2 586,251 + +1.7 586,251 + -1.8 586,251 + +0.8 586,251 + -0.6 586,251 + -0.2 586,252 - +1.5 586,252 - +1.5 586,252 - +0.2 586,252 - +2.6 586,257 + +2.5 586,258 - -0.5 586,258 - +1.8 586,319 - +0.4 586,338 + +1.4 586,338 + +0.1 586,338 + +0.4 586,338 + +0.6 586,338 + -1.0 586,343 + +0.7 586,344 - -1.0 586,344 - +3.2 586,344 - +1.8 586,377 + -3.2 586,378 - -2.6 586,378 - -1.1 586,381 - +1.2 586,381 - +0.6 586,381 - +3.5 586,381 - +0.3 586,432 - Sama_0476 0.12 -0.4 586,432 - Sama_0476 0.12 -1.5 586,432 - Sama_0476 0.12 -0.6 586,469 - Sama_0476 0.18 +0.5 586,469 - Sama_0476 0.18 -2.7 586,469 - Sama_0476 0.18 -0.0 586,497 - Sama_0476 0.23 +0.6 586,507 - Sama_0476 0.25 +0.9 586,555 - Sama_0476 0.33 +1.0 586,555 - Sama_0476 0.33 -2.7 586,555 - Sama_0476 0.33 -2.9 586,555 - Sama_0476 0.33 +1.8 586,555 - Sama_0476 0.33 +1.0 586,555 - Sama_0476 0.33 -0.7 586,612 - Sama_0476 0.42 +0.2 586,633 - Sama_0476 0.46 -1.5 586,633 - Sama_0476 0.46 +0.6 586,691 - Sama_0476 0.56 -0.2 586,691 - Sama_0476 0.56 -2.2 586,709 - Sama_0476 0.59 -0.2 586,756 + Sama_0476 0.67 -0.7 586,757 - Sama_0476 0.67 -2.5 586,768 + Sama_0476 0.69 +0.5 586,769 - Sama_0476 0.69 +0.4 586,769 - Sama_0476 0.69 -1.6 586,769 - Sama_0476 0.69 -3.6 586,769 - Sama_0476 0.69 -2.9 586,769 - Sama_0476 0.69 -0.4 586,813 + Sama_0476 0.76 -0.5 586,814 - Sama_0476 0.76 -0.1 586,814 - Sama_0476 0.76 +0.7 586,819 + Sama_0476 0.77 -2.9 586,820 - Sama_0476 0.77 +1.2 586,820 - Sama_0476 0.77 -1.1 586,820 - Sama_0476 0.77 -1.1 586,820 - Sama_0476 0.77 -1.1 586,820 - Sama_0476 0.77 +1.8 586,820 - Sama_0476 0.77 +1.1 586,820 - Sama_0476 0.77 +1.1 586,820 - Sama_0476 0.77 -1.8 586,820 - Sama_0476 0.77 -3.1 586,820 - Sama_0476 0.77 -1.4 586,909 - -0.1 586,909 - +0.7 586,909 - -1.1 586,909 - -1.1 586,909 - +0.7 586,909 - +2.2 586,909 - -1.9 586,909 - +3.5 586,909 - +0.2 586,909 - -0.8 586,918 - -0.3 586,918 - -0.3 586,918 - +0.5 586,918 - -3.4 586,918 - +1.4 586,946 + +0.2 586,961 + -0.4 586,962 - +1.0 586,962 - +0.2 587,059 + -0.1 587,059 + -2.6 587,059 + -0.6 587,059 + -2.2 587,059 + -2.5 587,059 + +2.0 587,059 + -0.5 587,059 + +1.0 587,059 + -1.8 587,059 + +0.3 587,059 + -1.4 587,059 + +1.2 587,059 + -0.4 587,059 + -1.9 587,060 - -0.8 587,060 - +0.8 587,060 - -0.3 587,060 - +2.0 587,060 - +0.7 587,060 - +2.2 587,079 + +1.8 587,080 - +2.8 587,080 - -1.5 587,080 - +0.7 587,096 + -2.9 587,135 + +1.3 587,170 + -2.5 587,262 + +1.0 587,262 + +1.4 587,262 + +2.3 587,330 + -1.1 587,330 + -1.9 587,331 - +1.8 587,338 + +0.5 587,338 + -0.5 587,338 + -1.1 587,339 - +1.5 587,367 + -0.3 587,391 + -0.6 587,391 + -3.5 587,391 + +1.2 587,392 - -1.4 587,392 - -0.4 587,417 + +0.5 587,417 + -2.1 587,417 + -0.4 587,417 + +1.9 587,418 - -0.0 587,418 - -2.9 587,437 - -2.2 587,469 + -0.4 587,469 + +0.2 587,469 + +1.6 587,470 - +0.4 587,470 - +1.3 587,559 + +0.7 587,560 - +1.4 587,560 - +1.4 587,601 + Sama_0477 0.12 +0.5 587,601 + Sama_0477 0.12 -2.9 587,601 + Sama_0477 0.12 +1.1 587,601 + Sama_0477 0.12 +0.2 587,601 + Sama_0477 0.12 -0.3 587,601 + Sama_0477 0.12 +1.7 587,601 + Sama_0477 0.12 -2.1 587,601 + Sama_0477 0.12 -1.1 587,602 - Sama_0477 0.12 -1.4 587,676 + Sama_0477 0.17 +0.6 587,773 + Sama_0477 0.23 +0.1 587,773 + Sama_0477 0.23 -0.7 587,773 + Sama_0477 0.23 -3.0 587,773 + Sama_0477 0.23 +1.7 587,773 + Sama_0477 0.23 +0.3 587,773 + Sama_0477 0.23 -0.1 587,773 + Sama_0477 0.23 -2.1 587,774 - Sama_0477 0.23 -2.1 587,774 - Sama_0477 0.23 -0.5 587,774 - Sama_0477 0.23 +0.9 587,774 - Sama_0477 0.23 +3.5 587,775 + Sama_0477 0.23 -2.8 587,775 + Sama_0477 0.23 -1.2 587,775 + Sama_0477 0.23 -0.2 587,776 - Sama_0477 0.23 -1.6 587,823 + Sama_0477 0.26 -0.4 587,824 - Sama_0477 0.26 +0.5 587,881 - Sama_0477 0.30 -0.2 587,898 + Sama_0477 0.31 -1.1 587,899 - Sama_0477 0.31 -0.8 587,899 - Sama_0477 0.31 -3.6 587,899 - Sama_0477 0.31 -0.5 587,899 - Sama_0477 0.31 -3.2 587,901 + Sama_0477 0.31 -2.1 587,901 + Sama_0477 0.31 +1.5 587,901 + Sama_0477 0.31 -0.4 587,901 + Sama_0477 0.31 -1.1 587,901 + Sama_0477 0.31 -0.8 587,902 - Sama_0477 0.31 +0.3 587,902 - Sama_0477 0.31 +1.0
Or see this region's nucleotide sequence