Strain Fitness in Shewanella amazonensis SB2B around Sama_0131

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
145,901	+		Sama_0130	0.60	+0.9
145,901	+		Sama_0130	0.60	-2.4
145,907	+		Sama_0130	0.61	+2.1
145,907	+		Sama_0130	0.61	+1.2
145,908	-		Sama_0130	0.61	-1.1
145,908	-		Sama_0130	0.61	-3.2
145,944	-		Sama_0130	0.64	+0.5
146,006	-		Sama_0130	0.68	+1.6
146,012	-		Sama_0130	0.69	-0.6
146,012	-		Sama_0130	0.69	-0.6
146,063	+		Sama_0130	0.72	+1.4
146,063	+		Sama_0130	0.72	+3.7
146,099	+		Sama_0130	0.75	+0.6
146,099	+		Sama_0130	0.75	-1.2
146,099	+		Sama_0130	0.75	+1.2
146,099	+		Sama_0130	0.75	+0.1
146,099	+		Sama_0130	0.75	+1.8
146,100	-		Sama_0130	0.75	-0.1
146,100	-		Sama_0130	0.75	+2.0
146,117	+		Sama_0130	0.76	-2.1
146,117	+		Sama_0130	0.76	+1.5
146,117	+		Sama_0130	0.76	-0.6
146,127	+		Sama_0130	0.77	+1.7
146,127	+		Sama_0130	0.77	-1.9
146,127	+		Sama_0130	0.77	+2.4
146,128	-		Sama_0130	0.77	-1.6
146,128	-		Sama_0130	0.77	-1.8
146,128	-		Sama_0130	0.77	-0.6
146,128	-		Sama_0130	0.77	-0.6
146,128	-		Sama_0130	0.77	-1.2
146,128	-		Sama_0130	0.77	-2.0
146,148	+		Sama_0130	0.79	-0.2
146,148	+		Sama_0130	0.79	+1.4
146,148	+		Sama_0130	0.79	+1.4
146,148	+		Sama_0130	0.79	+0.7
146,148	+		Sama_0130	0.79	-0.6
146,148	+		Sama_0130	0.79	-0.9
146,148	+		Sama_0130	0.79	+1.4
146,148	+		Sama_0130	0.79	-0.4
146,148	+		Sama_0130	0.79	-1.4
146,148	+		Sama_0130	0.79	-2.1
146,148	+		Sama_0130	0.79	+0.6
146,149	-		Sama_0130	0.79	-1.2
146,149	-		Sama_0130	0.79	+0.7
146,149	-		Sama_0130	0.79	+1.4
146,149	-		Sama_0130	0.79	+0.6
146,149	-		Sama_0130	0.79	-1.3
146,172	+		Sama_0130	0.80	-1.4
146,173	-		Sama_0130	0.81	-1.4
146,257	+		Sama_0130	0.87	-0.6
146,257	+		Sama_0130	0.87	+1.3
146,257	+		Sama_0130	0.87	+0.4
146,258	-		Sama_0130	0.87	-1.7
146,258	-		Sama_0130	0.87	+1.0
146,274	+		Sama_0130	0.88	+0.5
146,274	+		Sama_0130	0.88	+2.3
146,274	+		Sama_0130	0.88	-1.2
146,274	+		Sama_0130	0.88	+1.4
146,274	+		Sama_0130	0.88	+1.1
146,275	-		Sama_0130	0.88	+0.0
146,275	-		Sama_0130	0.88	+0.4
146,275	-		Sama_0130	0.88	+0.6
146,275	-		Sama_0130	0.88	-0.2
146,275	-		Sama_0130	0.88	+1.5
146,275	-		Sama_0130	0.88	-0.1
146,275	-		Sama_0130	0.88	-1.4
146,286	+		Sama_0130	0.89	-2.0
146,286	+		Sama_0130	0.89	-0.6
146,287	-		Sama_0130	0.89	+1.2
146,287	-		Sama_0130	0.89	-1.4
146,313	-				+0.8
146,374	+				-1.4
146,374	+				+0.1
146,374	+				-2.3
146,375	-				-0.2
146,458	+				+1.5
146,458	+				-1.0
146,458	+				+1.9
146,458	+				+0.4
146,458	+				+1.5
146,458	+				+0.2
146,459	-				+0.5
146,459	-				-0.2
146,459	-				-0.5
146,459	-				-0.8
146,459	-				+0.1
146,474	+				+1.1
146,474	+				+1.8
146,474	+				-2.2
146,475	-				+0.4
146,475	-				-1.1
146,483	+				-0.2
146,483	+				+1.6
146,493	+				-0.2
146,493	+				+0.4
146,493	+				+2.0
146,493	+				-2.9
146,494	-				-0.4
146,494	-				-0.2
146,494	-				+1.9
146,494	-				-1.4
146,494	-				+0.0
146,494	-				+1.0
146,494	-				-3.2
146,494	-				+1.3
146,497	+				-0.4
146,497	+				+0.7
146,497	+				+0.4
146,498	-				-1.2
146,498	-				-1.4
146,498	-				+2.4
146,498	-				+1.3
146,498	-				-4.2
146,555	+				+1.0
146,556	-				+2.0
146,685	+				-1.4
146,694	+				-2.2
146,694	+				-2.0
146,694	+				-1.8
146,695	-				+1.9
146,695	-				+2.2
146,695	-				+1.2
146,695	-				-0.8
146,695	-				-0.6
146,764	+				-0.9
146,819	+				-1.6
146,889	+				+1.6
146,889	+				+1.7
146,889	+				+0.3
146,890	-				+0.0
146,958	+				+1.6
146,959	-				+0.7
146,959	-				+1.2
146,959	-				-0.4
146,974	-				+2.5
147,015	+		Sama_0131	0.11	+2.2
147,016	-		Sama_0131	0.11	+1.4
147,039	+		Sama_0131	0.12	+1.1
147,054	+		Sama_0131	0.13	-1.1
147,082	-		Sama_0131	0.14	+1.9
147,097	-		Sama_0131	0.15	+1.0
147,217	+		Sama_0131	0.20	+0.5
147,218	-		Sama_0131	0.20	+1.5
147,243	-		Sama_0131	0.22	-0.5
147,415	+		Sama_0131	0.30	-2.9
147,416	-		Sama_0131	0.30	+2.3
147,470	+		Sama_0131	0.33	-0.1
147,470	+		Sama_0131	0.33	-2.2
147,496	+		Sama_0131	0.34	+0.6
147,497	-		Sama_0131	0.34	-0.6
147,497	-		Sama_0131	0.34	-1.8
147,497	-		Sama_0131	0.34	-1.6
147,497	-		Sama_0131	0.34	-2.1
147,534	+		Sama_0131	0.36	-1.7
147,534	+		Sama_0131	0.36	-3.8
147,534	+		Sama_0131	0.36	-1.4
147,534	+		Sama_0131	0.36	+5.1
147,535	-		Sama_0131	0.36	+1.4
147,535	-		Sama_0131	0.36	+0.1
147,559	-		Sama_0131	0.37	+2.8
147,616	+		Sama_0131	0.40	-0.2
147,616	+		Sama_0131	0.40	-0.2
147,624	+		Sama_0131	0.40	-0.5
147,625	-		Sama_0131	0.40	+1.8
147,688	+		Sama_0131	0.43	-1.8
147,688	+		Sama_0131	0.43	+2.0
147,691	+		Sama_0131	0.43	+0.4
147,691	+		Sama_0131	0.43	+0.0
147,691	+		Sama_0131	0.43	-1.6
147,691	+		Sama_0131	0.43	-2.2
147,691	+		Sama_0131	0.43	-0.9
147,691	+		Sama_0131	0.43	-2.0
147,691	+		Sama_0131	0.43	-1.0
147,691	+		Sama_0131	0.43	-2.5
147,692	-		Sama_0131	0.43	+1.4
147,692	-		Sama_0131	0.43	-1.6
147,692	-		Sama_0131	0.43	+1.1
147,692	-		Sama_0131	0.43	+3.1
147,692	-		Sama_0131	0.43	-1.1
147,692	-		Sama_0131	0.43	+0.4
147,692	-		Sama_0131	0.43	+2.0
147,692	-		Sama_0131	0.43	-1.3
147,692	-		Sama_0131	0.43	+1.4
147,700	-		Sama_0131	0.44	+0.0
147,721	+		Sama_0131	0.45	-1.6
147,721	+		Sama_0131	0.45	-0.3
147,791	+		Sama_0131	0.48	-0.4
147,791	+		Sama_0131	0.48	-0.9
147,791	+		Sama_0131	0.48	-3.2
147,792	-		Sama_0131	0.48	-0.6
147,792	-		Sama_0131	0.48	+2.6
147,792	-		Sama_0131	0.48	-1.6
147,829	-		Sama_0131	0.50	+0.3
147,881	-		Sama_0131	0.52	-1.8
147,881	-		Sama_0131	0.52	+1.0
147,949	-		Sama_0131	0.55	+2.8
148,046	+		Sama_0131	0.60	+1.9
148,046	+		Sama_0131	0.60	-0.5
148,047	-		Sama_0131	0.60	-3.1
148,084	+		Sama_0131	0.62	-2.4
148,084	+		Sama_0131	0.62	-1.8
148,084	+		Sama_0131	0.62	-0.8
148,084	+		Sama_0131	0.62	-0.3
148,084	+		Sama_0131	0.62	+0.1
148,084	+		Sama_0131	0.62	-2.2
148,084	+		Sama_0131	0.62	-1.2
148,085	-		Sama_0131	0.62	-3.1
148,085	-		Sama_0131	0.62	+2.7
148,085	-		Sama_0131	0.62	+1.3
148,085	-		Sama_0131	0.62	+0.0
148,085	-		Sama_0131	0.62	+3.1
148,102	+		Sama_0131	0.63	+1.4
148,102	+		Sama_0131	0.63	-1.4
148,108	+		Sama_0131	0.63	+3.6
148,108	+		Sama_0131	0.63	+0.0
148,108	+		Sama_0131	0.63	-0.7
148,108	+		Sama_0131	0.63	-2.5
148,108	+		Sama_0131	0.63	-3.5
148,109	-		Sama_0131	0.63	-0.0
148,109	-		Sama_0131	0.63	+1.1
148,119	+		Sama_0131	0.64	+1.2
148,167	+		Sama_0131	0.66	-0.3
148,168	-		Sama_0131	0.66	+2.5
148,204	+		Sama_0131	0.68	-1.8
148,204	+		Sama_0131	0.68	+1.0
148,204	+		Sama_0131	0.68	+0.8
148,205	-		Sama_0131	0.68	+0.2
148,205	-		Sama_0131	0.68	+1.3
148,205	-		Sama_0131	0.68	-0.2
148,205	-		Sama_0131	0.68	-1.0
148,282	+		Sama_0131	0.71	+1.7
148,282	+		Sama_0131	0.71	-2.1
148,283	-		Sama_0131	0.71	+0.4
148,340	+		Sama_0131	0.74	+0.8
148,340	+		Sama_0131	0.74	+1.4
148,340	+		Sama_0131	0.74	+1.0
148,340	+		Sama_0131	0.74	+0.5
148,341	-		Sama_0131	0.74	-0.5
148,341	-		Sama_0131	0.74	-0.8
148,341	-		Sama_0131	0.74	-1.4
148,381	+		Sama_0131	0.76	-3.2
148,381	+		Sama_0131	0.76	-2.2
148,382	-		Sama_0131	0.76	+1.7
148,382	-		Sama_0131	0.76	+1.8
148,387	+		Sama_0131	0.76	+2.5
148,387	+		Sama_0131	0.76	-0.2
148,387	+		Sama_0131	0.76	-2.4
148,388	-		Sama_0131	0.76	-1.0
148,408	+		Sama_0131	0.77	+0.8
148,408	+		Sama_0131	0.77	-0.2
148,408	+		Sama_0131	0.77	+0.2
148,408	+		Sama_0131	0.77	-2.8
148,408	+		Sama_0131	0.77	-2.8
148,409	-		Sama_0131	0.77	-0.5
148,409	-		Sama_0131	0.77	+1.2
148,409	-		Sama_0131	0.77	-0.2
148,409	-		Sama_0131	0.77	-0.6
148,409	-		Sama_0131	0.77	+0.9
148,409	-		Sama_0131	0.77	-0.1
148,409	-		Sama_0131	0.77	+1.7
148,409	-		Sama_0131	0.77	-3.2
148,431	+		Sama_0131	0.79	-0.6
148,431	+		Sama_0131	0.79	+3.2
148,431	+		Sama_0131	0.79	+0.7
148,431	+		Sama_0131	0.79	-1.4
148,431	+		Sama_0131	0.79	-3.8
148,431	+		Sama_0131	0.79	+0.5
148,431	+		Sama_0131	0.79	-1.5
148,432	-		Sama_0131	0.79	+1.0
148,432	-		Sama_0131	0.79	-0.6
148,432	-		Sama_0131	0.79	-2.1
148,432	-		Sama_0131	0.79	-1.5
148,432	-		Sama_0131	0.79	+2.0
148,432	-		Sama_0131	0.79	+1.9
148,435	+		Sama_0131	0.79	+1.0
148,435	+		Sama_0131	0.79	-2.1
148,435	+		Sama_0131	0.79	-1.7
148,435	+		Sama_0131	0.79	+3.0
148,436	-		Sama_0131	0.79	+0.9
148,436	-		Sama_0131	0.79	+1.8
148,436	-		Sama_0131	0.79	+3.2
148,454	-		Sama_0131	0.80	-0.3
148,487	+		Sama_0131	0.81	-1.0
148,487	+		Sama_0131	0.81	-2.0
148,487	+		Sama_0131	0.81	+1.0
148,487	+		Sama_0131	0.81	+0.1
148,523	-		Sama_0131	0.83	+0.4
148,523	-		Sama_0131	0.83	+0.9
148,545	+		Sama_0131	0.84	-0.7
148,545	+		Sama_0131	0.84	-0.2
148,545	+		Sama_0131	0.84	-1.4
148,546	-		Sama_0131	0.84	-0.5
148,546	-		Sama_0131	0.84	+1.4
148,595	-		Sama_0131	0.86	-0.4
148,613	-		Sama_0131	0.87	+0.2
148,672	+				-0.9
148,672	+				-2.3
148,673	-				-2.7
148,673	-				-0.2
148,673	-				-1.0
148,720	+				-0.2
148,720	+				-1.0
148,720	+				-0.6
148,721	-				-2.8
148,721	-				-1.2
148,756	+				+1.5
148,757	-				+2.6
148,757	-				-0.2
148,757	-				+1.7
148,757	-				+4.0
148,777	+				-1.0
148,777	+				-2.0
148,777	+				+0.6
148,777	+				-2.1
148,778	-				-0.0
148,778	-				+1.4
148,778	-				+0.7
148,778	-				-2.4
148,778	-				+3.3
148,791	+				-3.1
148,810	+				-2.2
148,854	+				-1.9
148,854	+				-1.4
149,009	+				-3.4
149,010	-				+0.1
149,125	+		Sama_0132	0.17	+1.8
149,126	-		Sama_0132	0.17	-1.1
149,126	-		Sama_0132	0.17	-0.1
149,126	-		Sama_0132	0.17	+1.2
149,126	-		Sama_0132	0.17	+2.0
149,126	-		Sama_0132	0.17	-2.4
149,249	+		Sama_0132	0.25	+0.1
149,250	-		Sama_0132	0.25	+0.5
149,257	+		Sama_0132	0.26	+2.0
149,257	+		Sama_0132	0.26	-1.1
149,257	+		Sama_0132	0.26	-1.3
149,257	+		Sama_0132	0.26	-1.0
149,257	+		Sama_0132	0.26	-0.9
149,257	+		Sama_0132	0.26	+0.8
149,257	+		Sama_0132	0.26	-1.7
149,257	+		Sama_0132	0.26	-0.2
149,257	+		Sama_0132	0.26	-1.3
149,258	-		Sama_0132	0.26	-1.4
149,258	-		Sama_0132	0.26	+1.7
149,258	-		Sama_0132	0.26	+1.1
149,258	-		Sama_0132	0.26	-1.0
149,258	-		Sama_0132	0.26	-1.8
149,258	-		Sama_0132	0.26	-0.0
149,258	-		Sama_0132	0.26	+1.3
149,258	-		Sama_0132	0.26	-1.4
149,258	-		Sama_0132	0.26	-1.0
149,258	-		Sama_0132	0.26	+0.7
149,258	-		Sama_0132	0.26	-1.0
149,258	-		Sama_0132	0.26	+1.4
149,258	-		Sama_0132	0.26	+0.3
149,258	-		Sama_0132	0.26	+2.0
149,261	+		Sama_0132	0.26	+0.0
149,261	+		Sama_0132	0.26	-0.2
149,261	+		Sama_0132	0.26	-0.5
149,261	+		Sama_0132	0.26	-0.6
149,261	+		Sama_0132	0.26	-0.5
149,261	+		Sama_0132	0.26	-2.6
149,262	-		Sama_0132	0.26	+0.9
149,262	-		Sama_0132	0.26	+0.2
149,262	-		Sama_0132	0.26	+3.8
149,262	-		Sama_0132	0.26	+1.2
149,262	-		Sama_0132	0.26	+0.0
149,262	-		Sama_0132	0.26	+1.1
149,262	-		Sama_0132	0.26	+0.7
149,262	-		Sama_0132	0.26	-1.8
149,262	-		Sama_0132	0.26	+0.9
149,262	-		Sama_0132	0.26	-1.0
149,262	-		Sama_0132	0.26	+2.8
149,262	-		Sama_0132	0.26	+1.1
149,262	-		Sama_0132	0.26	+0.9
149,262	-		Sama_0132	0.26	-1.3
149,262	-		Sama_0132	0.26	-0.1
149,426	+		Sama_0132	0.37	+0.7
149,426	+		Sama_0132	0.37	-2.0
149,426	+		Sama_0132	0.37	-0.2
149,426	+		Sama_0132	0.37	+0.1
149,426	+		Sama_0132	0.37	+2.1
149,427	-		Sama_0132	0.37	-1.0
149,427	-		Sama_0132	0.37	+2.6
149,427	-		Sama_0132	0.37	+0.6
149,427	-		Sama_0132	0.37	+0.3
149,614	+		Sama_0132	0.50	-0.6
149,614	+		Sama_0132	0.50	+0.5
149,614	+		Sama_0132	0.50	-1.9
149,615	-		Sama_0132	0.50	+0.8
149,615	-		Sama_0132	0.50	-0.8
149,615	-		Sama_0132	0.50	-0.6
149,621	+		Sama_0132	0.50	-2.0
149,621	+		Sama_0132	0.50	-1.7
149,621	+		Sama_0132	0.50	+1.4
149,622	-		Sama_0132	0.50	-1.2
149,622	-		Sama_0132	0.50	-1.0
149,640	-		Sama_0132	0.51	-0.3
149,855	+		Sama_0132	0.66	-1.0
149,865	-		Sama_0132	0.66	-1.0