Strain Fitness in Shewanella amazonensis SB2B around Sama_0126

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
138,835	+		Sama_0125	0.28	+1.9
138,836	-		Sama_0125	0.28	-0.0
138,887	+		Sama_0125	0.32	+0.8
138,887	+		Sama_0125	0.32	+0.7
138,887	+		Sama_0125	0.32	+1.2
138,888	-		Sama_0125	0.32	+0.3
139,070	+		Sama_0125	0.45	+1.7
139,070	+		Sama_0125	0.45	+4.0
139,136	+		Sama_0125	0.50	+3.4
139,244	+		Sama_0125	0.58	-0.5
139,244	+		Sama_0125	0.58	+1.5
139,245	-		Sama_0125	0.58	+1.3
139,245	-		Sama_0125	0.58	-0.4
139,245	-		Sama_0125	0.58	+1.6
139,298	+		Sama_0125	0.62	+1.4
139,380	+		Sama_0125	0.67	+0.2
139,380	+		Sama_0125	0.67	+2.1
139,381	-		Sama_0125	0.68	+2.0
139,381	-		Sama_0125	0.68	+2.2
139,408	+		Sama_0125	0.69	+1.2
139,408	+		Sama_0125	0.69	+1.1
139,408	+		Sama_0125	0.69	+1.9
139,519	+		Sama_0125	0.78	+1.1
139,519	+		Sama_0125	0.78	-1.7
139,519	+		Sama_0125	0.78	+1.8
139,520	-		Sama_0125	0.78	+1.5
139,626	-		Sama_0125	0.85	+1.2
139,702	+				-1.8
139,702	+				+0.7
139,702	+				+0.7
139,703	-				+0.2
139,703	-				-2.6
139,703	-				-0.1
139,733	+				+3.3
139,734	-				+1.1
139,734	-				-2.1
139,734	-				-3.0
139,734	-				-0.5
139,734	-				+1.5
139,790	-				-0.6
139,827	+				+1.1
139,827	+				-1.7
139,827	+				+0.4
139,827	+				+2.2
139,828	-				+0.9
139,828	-				-1.8
139,828	-				-0.0
139,828	-				+2.2
139,862	-				+2.1
139,862	-				+1.8
139,862	-				+1.4
139,862	-				+1.4
139,903	+				-1.4
139,903	+				+2.2
139,903	+				+4.3
139,903	+				+2.3
139,903	+				+2.3
139,904	-				+1.3
139,904	-				+2.0
139,904	-				-1.8
139,904	-				+2.2
139,904	-				+0.3
139,904	-				+0.6
139,904	-				+0.8
139,909	+				+1.6
139,909	+				+1.3
139,909	+				+1.1
139,909	+				+2.4
139,909	+				+2.0
139,910	-				-0.5
139,910	-				+3.4
139,910	-				+2.8
139,926	+				+0.8
139,926	+				+0.6
139,926	+				-2.0
139,927	-				+1.4
139,947	+				+1.5
139,947	+				-0.5
139,947	+				+0.2
139,948	-				+1.7
139,948	-				-2.4
139,948	-				+2.0
139,948	-				+1.7
139,951	+				+3.4
139,951	+				+2.4
139,951	+				+0.4
139,951	+				+3.3
139,951	+				+2.8
139,952	-				+0.4
139,952	-				-0.2
139,952	-				-3.7
139,961	+				+2.4
139,961	+				-1.7
139,961	+				+1.9
139,961	+				+0.5
139,961	+				-1.2
139,962	-				+2.6
139,962	-				+1.5
139,969	+				+0.5
139,970	-				+1.3
139,976	+				+0.4
139,976	+				+2.0
139,976	+				-0.2
139,977	-				-2.1
139,977	-				+0.5
139,996	+				+2.1
139,996	+				+2.0
139,996	+				+0.2
139,997	-				-0.4
139,997	-				+0.6
140,004	+				+1.7
140,004	+				+1.3
140,116	+		Sama_0126	0.13	+1.6
140,177	-		Sama_0126	0.16	+1.5
140,199	+		Sama_0126	0.17	+2.5
140,209	+		Sama_0126	0.18	+1.8
140,209	+		Sama_0126	0.18	+1.5
140,209	+		Sama_0126	0.18	+0.2
140,210	-		Sama_0126	0.18	+1.1
140,262	+		Sama_0126	0.20	+0.3
140,263	-		Sama_0126	0.20	+2.3
140,281	+		Sama_0126	0.21	+0.4
140,281	+		Sama_0126	0.21	+1.4
140,457	+		Sama_0126	0.29	+2.7
140,457	+		Sama_0126	0.29	+1.0
140,457	+		Sama_0126	0.29	+2.0
140,458	-		Sama_0126	0.29	+1.1
140,465	+		Sama_0126	0.30	+1.4
140,465	+		Sama_0126	0.30	+1.6
140,465	+		Sama_0126	0.30	+0.6
140,465	+		Sama_0126	0.30	+1.0
140,465	+		Sama_0126	0.30	+2.1
140,503	+		Sama_0126	0.32	-0.1
140,504	-		Sama_0126	0.32	+1.7
140,531	+		Sama_0126	0.33	+0.1
140,531	+		Sama_0126	0.33	+0.7
140,531	+		Sama_0126	0.33	+1.4
140,532	-		Sama_0126	0.33	+2.6
140,532	-		Sama_0126	0.33	+3.1
140,532	-		Sama_0126	0.33	+2.0
140,532	-		Sama_0126	0.33	-0.1
140,542	+		Sama_0126	0.33	+1.1
140,542	+		Sama_0126	0.33	+0.1
140,542	+		Sama_0126	0.33	+1.5
140,542	+		Sama_0126	0.33	+3.3
140,542	+		Sama_0126	0.33	-1.7
140,543	-		Sama_0126	0.33	+0.7
140,543	-		Sama_0126	0.33	+0.8
140,543	-		Sama_0126	0.33	+0.9
140,596	+		Sama_0126	0.36	+1.1
140,596	+		Sama_0126	0.36	+1.2
140,597	-		Sama_0126	0.36	+2.2
140,670	+		Sama_0126	0.39	+0.6
140,671	-		Sama_0126	0.39	+1.6
140,683	+		Sama_0126	0.40	+2.0
140,735	+		Sama_0126	0.42	+1.7
140,749	+		Sama_0126	0.43	-2.2
140,749	+		Sama_0126	0.43	+0.7
140,749	+		Sama_0126	0.43	+3.0
140,749	+		Sama_0126	0.43	+2.4
140,750	-		Sama_0126	0.43	+1.4
140,802	+		Sama_0126	0.46	+1.6
140,802	+		Sama_0126	0.46	+2.0
140,802	+		Sama_0126	0.46	-1.6
140,802	+		Sama_0126	0.46	-0.2
140,803	-		Sama_0126	0.46	+1.3
140,803	-		Sama_0126	0.46	-1.0
140,803	-		Sama_0126	0.46	-1.4
140,803	-		Sama_0126	0.46	+0.2
140,803	-		Sama_0126	0.46	+0.6
140,804	+		Sama_0126	0.46	+0.8
140,804	+		Sama_0126	0.46	+2.0
140,804	+		Sama_0126	0.46	-2.0
140,804	+		Sama_0126	0.46	+1.1
140,804	+		Sama_0126	0.46	+0.4
140,804	+		Sama_0126	0.46	+1.9
140,804	+		Sama_0126	0.46	-1.0
140,804	+		Sama_0126	0.46	+2.6
140,804	+		Sama_0126	0.46	+1.0
140,804	+		Sama_0126	0.46	-2.8
140,804	+		Sama_0126	0.46	+1.4
140,804	+		Sama_0126	0.46	+2.2
140,804	+		Sama_0126	0.46	+2.4
140,804	+		Sama_0126	0.46	+0.6
140,804	+		Sama_0126	0.46	-1.0
140,804	+		Sama_0126	0.46	+0.9
140,804	+		Sama_0126	0.46	-1.3
140,805	-		Sama_0126	0.46	+1.8
140,805	-		Sama_0126	0.46	+1.4
140,805	-		Sama_0126	0.46	+3.0
140,805	-		Sama_0126	0.46	+1.2
140,805	-		Sama_0126	0.46	+3.3
140,805	-		Sama_0126	0.46	+0.9
140,805	-		Sama_0126	0.46	+2.0
140,805	-		Sama_0126	0.46	-0.2
140,805	-		Sama_0126	0.46	-0.2
140,805	-		Sama_0126	0.46	+1.1
140,836	+		Sama_0126	0.47	+0.3
140,836	+		Sama_0126	0.47	+0.7
140,836	+		Sama_0126	0.47	+2.6
140,836	+		Sama_0126	0.47	+1.1
140,836	+		Sama_0126	0.47	+0.7
140,836	+		Sama_0126	0.47	+1.5
140,836	+		Sama_0126	0.47	+0.6
140,837	-		Sama_0126	0.47	+0.8
140,837	-		Sama_0126	0.47	+0.7
140,837	-		Sama_0126	0.47	+1.5
140,837	-		Sama_0126	0.47	-0.8
140,837	-		Sama_0126	0.47	-1.2
140,837	-		Sama_0126	0.47	+4.1
140,837	-		Sama_0126	0.47	-1.8
140,837	-		Sama_0126	0.47	+0.7
140,840	+		Sama_0126	0.47	+1.5
140,840	+		Sama_0126	0.47	+1.5
140,840	+		Sama_0126	0.47	-1.0
140,840	+		Sama_0126	0.47	+1.8
140,840	+		Sama_0126	0.47	-1.3
140,840	+		Sama_0126	0.47	-2.7
140,840	+		Sama_0126	0.47	+2.0
140,841	-		Sama_0126	0.47	+1.8
140,841	-		Sama_0126	0.47	+1.3
140,841	-		Sama_0126	0.47	+0.8
140,841	-		Sama_0126	0.47	+0.1
140,841	-		Sama_0126	0.47	-1.4
140,841	-		Sama_0126	0.47	+3.3
140,848	+		Sama_0126	0.48	+1.0
140,848	+		Sama_0126	0.48	-0.5
140,849	-		Sama_0126	0.48	+2.8
140,849	-		Sama_0126	0.48	-0.6
140,856	+		Sama_0126	0.48	+1.2
140,856	+		Sama_0126	0.48	+1.9
140,856	+		Sama_0126	0.48	+0.3
140,856	+		Sama_0126	0.48	-1.6
140,857	-		Sama_0126	0.48	+3.0
140,857	-		Sama_0126	0.48	+2.1
140,857	-		Sama_0126	0.48	-1.6
140,857	-		Sama_0126	0.48	+2.4
140,857	-		Sama_0126	0.48	+0.9
140,871	+		Sama_0126	0.49	-0.6
140,871	+		Sama_0126	0.49	+0.3
140,871	+		Sama_0126	0.49	-0.4
140,871	+		Sama_0126	0.49	+0.9
140,871	+		Sama_0126	0.49	+2.7
140,871	+		Sama_0126	0.49	+2.0
140,871	+		Sama_0126	0.49	+3.3
140,872	-		Sama_0126	0.49	-0.6
140,872	-		Sama_0126	0.49	+0.8
140,872	-		Sama_0126	0.49	+2.4
140,872	-		Sama_0126	0.49	-0.5
140,872	-		Sama_0126	0.49	+0.5
140,872	-		Sama_0126	0.49	+2.5
140,872	-		Sama_0126	0.49	+0.2
140,872	-		Sama_0126	0.49	+0.5
140,910	-		Sama_0126	0.51	-1.2
140,910	-		Sama_0126	0.51	+1.7
140,922	-		Sama_0126	0.51	+1.6
140,961	+		Sama_0126	0.53	-1.1
140,961	+		Sama_0126	0.53	+1.0
140,961	+		Sama_0126	0.53	+1.9
140,961	+		Sama_0126	0.53	+0.6
140,961	+		Sama_0126	0.53	+2.3
140,962	-		Sama_0126	0.53	+2.8
140,983	+		Sama_0126	0.54	+0.4
140,988	+		Sama_0126	0.54	+1.2
140,988	+		Sama_0126	0.54	-1.0
140,988	+		Sama_0126	0.54	-1.0
140,988	+		Sama_0126	0.54	+0.0
140,988	+		Sama_0126	0.54	+3.2
140,989	-		Sama_0126	0.54	-2.3
140,989	-		Sama_0126	0.54	+1.4
140,989	-		Sama_0126	0.54	+0.5
140,989	-		Sama_0126	0.54	+2.0
140,989	-		Sama_0126	0.54	+0.8
140,989	-		Sama_0126	0.54	+1.4
141,118	-		Sama_0126	0.60	+0.4
141,244	+		Sama_0126	0.66	-0.6
141,244	+		Sama_0126	0.66	+1.5
141,245	-		Sama_0126	0.66	+2.7
141,245	-		Sama_0126	0.66	-2.2
141,245	-		Sama_0126	0.66	+2.3
141,245	-		Sama_0126	0.66	-0.3
141,245	-		Sama_0126	0.66	-0.7
141,245	-		Sama_0126	0.66	+1.2
141,245	-		Sama_0126	0.66	+3.8
141,268	+		Sama_0126	0.68	+1.3
141,269	-		Sama_0126	0.68	+1.2
141,269	-		Sama_0126	0.68	-0.0
141,271	+		Sama_0126	0.68	+0.3
141,272	-		Sama_0126	0.68	+1.8
141,298	+		Sama_0126	0.69	-0.6
141,298	+		Sama_0126	0.69	+0.3
141,298	+		Sama_0126	0.69	+0.7
141,299	-		Sama_0126	0.69	+0.4
141,328	+		Sama_0126	0.70	+0.4
141,328	+		Sama_0126	0.70	+1.4
141,329	-		Sama_0126	0.70	-1.4
141,329	-		Sama_0126	0.70	+0.6
141,364	+		Sama_0126	0.72	+2.1
141,385	-		Sama_0126	0.73	+1.7
141,385	-		Sama_0126	0.73	+1.9
141,395	-		Sama_0126	0.73	+2.1
141,395	-		Sama_0126	0.73	+1.7
141,413	+		Sama_0126	0.74	-0.2
141,413	+		Sama_0126	0.74	+2.0
141,414	-		Sama_0126	0.74	+2.4
141,414	-		Sama_0126	0.74	+0.7
141,434	-		Sama_0126	0.75	+3.0
141,459	+		Sama_0126	0.76	+1.1
141,459	+		Sama_0126	0.76	-1.4
141,486	+		Sama_0126	0.78	+1.1
141,538	+		Sama_0126	0.80	+2.7
141,577	-		Sama_0126	0.82	-2.0
141,577	-		Sama_0126	0.82	+1.5
141,577	-		Sama_0126	0.82	+1.9
141,577	-		Sama_0126	0.82	+3.2
141,592	+		Sama_0126	0.83	-0.2
141,593	-		Sama_0126	0.83	+4.1
141,649	+		Sama_0126	0.85	-0.7
141,649	+		Sama_0126	0.85	-0.2
141,649	+		Sama_0126	0.85	+2.8
141,650	-		Sama_0126	0.85	+0.3
141,650	-		Sama_0126	0.85	+0.8
141,650	-		Sama_0126	0.85	+1.7
141,650	-		Sama_0126	0.85	+0.9
141,654	-		Sama_0126	0.86	+1.6
141,696	-		Sama_0126	0.88	+1.5
141,758	+				+1.4
141,758	+				+1.5
141,758	+				+0.8
141,759	-				+0.1
141,803	+				+3.4
141,803	+				+1.7
141,804	-				-1.2
141,804	-				+1.5
141,804	-				-0.6
141,804	-				+0.9
141,834	+				-1.2
141,834	+				+1.7
141,834	+				+0.6
141,834	+				-2.5
141,834	+				+1.5
141,834	+				+3.4
141,834	+				+1.8
141,834	+				+1.6
141,834	+				+0.7
141,834	+				-0.4
141,835	-				-0.2
141,835	-				-1.4
141,835	-				-0.6
141,835	-				+3.7
141,835	-				+0.9
141,835	-				+1.7
141,871	+				-1.4
141,871	+				+0.7
141,872	-				-1.4
141,872	-				-0.6
141,884	+				+3.4
141,884	+				+1.3
141,885	-				-0.7
141,920	+				+3.4
141,921	-				+1.5
141,957	-				-0.5
142,030	-				-1.0
142,030	-				-1.6
142,030	-				+1.3
142,183	-				-0.1
142,183	-				-0.8
142,183	-				+1.7
142,183	-				-1.6
142,232	+				-1.1
142,232	+				-0.2
142,233	-				-0.5
142,253	+				-1.0
142,253	+				+0.7
142,253	+				+1.6
142,254	-				-2.8
142,254	-				+0.2
142,254	-				-2.8
142,254	-				+0.4
142,254	-				-1.2
142,254	-				-1.8
142,254	-				-2.7
142,254	-				-2.2
142,254	-				+0.1
142,326	-				-0.0
142,350	+				+1.1
142,350	+				-0.6
142,351	-				+1.4
142,351	-				+0.4
142,351	-				-0.8
142,351	-				-1.8
142,362	+				-1.2
142,362	+				-1.0
142,363	-				-1.0
142,368	+				+0.4
142,368	+				-2.7
142,368	+				-2.6
142,422	+				+2.6
142,422	+				+1.0
142,422	+				+1.3
142,422	+				-0.0
142,422	+				-1.6
142,422	+				+1.0
142,422	+				-0.3
142,423	-				+0.8
142,423	-				-1.3
142,502	+				+1.2
142,502	+				-0.0
142,503	-				-1.0
142,512	+				+0.4
142,512	+				+2.3
142,512	+				-1.6
142,512	+				+1.7
142,512	+				+1.1
142,513	-				-0.4
142,513	-				+3.0
142,513	-				+1.8
142,513	-				-1.4
142,513	-				+0.2
142,513	-				-2.2
142,513	-				+1.0
142,533	+				+0.5
142,533	+				+1.5
142,534	-				-1.7
142,534	-				+0.6
142,534	-				+1.9
142,534	-				+0.0
142,534	-				+0.8
142,534	-				+0.2
142,534	-				-2.3
142,534	-				-3.0
142,554	+				-2.4
142,554	+				-2.2
142,555	-				-2.5
142,555	-				+2.1
142,555	-				+1.2
142,569	+				-2.2
142,597	-				+0.6
142,603	-				+1.1
142,661	+				+1.5
142,662	-				-0.7
142,710	-				-4.8
142,732	+				+2.4
142,732	+				+0.0
142,805	+				-0.7
142,805	+				+1.1
142,895	+		Sama_0127	0.19	-0.6
142,937	+		Sama_0127	0.28	-2.3
142,937	+		Sama_0127	0.28	+1.6
142,953	+		Sama_0127	0.31	-0.4
142,953	+		Sama_0127	0.31	-4.0
142,953	+		Sama_0127	0.31	-3.5
142,953	+		Sama_0127	0.31	+0.3
142,953	+		Sama_0127	0.31	-2.3
142,953	+		Sama_0127	0.31	-2.1
142,953	+		Sama_0127	0.31	-0.6
142,953	+		Sama_0127	0.31	+1.8
142,953	+		Sama_0127	0.31	-1.1
142,953	+		Sama_0127	0.31	-4.1
142,954	-		Sama_0127	0.32	+1.1
142,954	-		Sama_0127	0.32	+0.4