Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4817.1 and Xcc-8004.4818.1 are separated by 163 nucleotides Xcc-8004.4818.1 and Xcc-8004.4819.1 overlap by 4 nucleotides Xcc-8004.4819.1 and Xcc-8004.4820.1 are separated by 87 nucleotides Xcc-8004.4820.1 and Xcc-8004.4821.1 are separated by 170 nucleotides
Xcc-8004.4817.1: Xcc-8004.4817.1 - L-alanine-DL-glutamate epimerase, at 4,583,273 to 4,584,367
Xcc-8004.4817.1
Xcc-8004.4818.1: Xcc-8004.4818.1 - Gll0911 protein, at 4,584,531 to 4,585,307
Xcc-8004.4818.1
Xcc-8004.4819.1: Xcc-8004.4819.1 - Amino acid permease, at 4,585,304 to 4,586,605
Xcc-8004.4819.1
Xcc-8004.4820.1: Xcc-8004.4820.1 - FIG01211334: hypothetical protein, at 4,586,693 to 4,587,190
Xcc-8004.4820.1
Xcc-8004.4821.1: Xcc-8004.4821.1 - FIG01209726: hypothetical protein, at 4,587,361 to 4,587,708
Xcc-8004.4821.1
Position (kb) 4585
4586
4587 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4584.433 kb on - strand at 4584.437 kb on + strand at 4584.437 kb on + strand at 4584.438 kb on - strand at 4584.438 kb on - strand at 4584.468 kb on + strand at 4584.468 kb on + strand at 4584.468 kb on + strand at 4584.468 kb on + strand at 4584.468 kb on + strand at 4584.468 kb on + strand at 4584.469 kb on - strand at 4584.469 kb on - strand at 4584.469 kb on - strand at 4584.870 kb on + strand, within Xcc-8004.4818.1 at 4584.871 kb on - strand, within Xcc-8004.4818.1 at 4584.924 kb on + strand, within Xcc-8004.4818.1 at 4584.925 kb on - strand, within Xcc-8004.4818.1 at 4584.925 kb on - strand, within Xcc-8004.4818.1 at 4584.925 kb on - strand, within Xcc-8004.4818.1 at 4584.954 kb on + strand, within Xcc-8004.4818.1 at 4584.954 kb on + strand, within Xcc-8004.4818.1 at 4584.954 kb on + strand, within Xcc-8004.4818.1 at 4584.955 kb on - strand, within Xcc-8004.4818.1 at 4584.955 kb on - strand, within Xcc-8004.4818.1 at 4585.235 kb on - strand at 4585.252 kb on - strand at 4585.403 kb on + strand at 4585.403 kb on + strand at 4585.403 kb on + strand at 4585.404 kb on - strand at 4585.404 kb on - strand at 4585.404 kb on - strand at 4585.500 kb on - strand, within Xcc-8004.4819.1 at 4585.541 kb on + strand, within Xcc-8004.4819.1 at 4585.541 kb on + strand, within Xcc-8004.4819.1 at 4585.541 kb on + strand, within Xcc-8004.4819.1 at 4585.541 kb on + strand, within Xcc-8004.4819.1 at 4585.541 kb on + strand, within Xcc-8004.4819.1 at 4585.541 kb on + strand, within Xcc-8004.4819.1 at 4585.541 kb on + strand, within Xcc-8004.4819.1 at 4585.541 kb on + strand, within Xcc-8004.4819.1 at 4585.541 kb on + strand, within Xcc-8004.4819.1 at 4585.541 kb on + strand, within Xcc-8004.4819.1 at 4585.542 kb on - strand, within Xcc-8004.4819.1 at 4585.542 kb on - strand, within Xcc-8004.4819.1 at 4585.542 kb on - strand, within Xcc-8004.4819.1 at 4585.542 kb on - strand, within Xcc-8004.4819.1 at 4585.542 kb on - strand, within Xcc-8004.4819.1 at 4585.542 kb on - strand, within Xcc-8004.4819.1 at 4585.542 kb on - strand, within Xcc-8004.4819.1 at 4585.542 kb on - strand, within Xcc-8004.4819.1 at 4585.542 kb on - strand, within Xcc-8004.4819.1 at 4585.542 kb on - strand, within Xcc-8004.4819.1 at 4585.542 kb on - strand, within Xcc-8004.4819.1 at 4585.547 kb on + strand, within Xcc-8004.4819.1 at 4585.547 kb on + strand, within Xcc-8004.4819.1 at 4585.547 kb on + strand, within Xcc-8004.4819.1 at 4585.547 kb on + strand, within Xcc-8004.4819.1 at 4585.548 kb on - strand, within Xcc-8004.4819.1 at 4585.548 kb on - strand, within Xcc-8004.4819.1 at 4585.548 kb on - strand, within Xcc-8004.4819.1 at 4585.549 kb on + strand, within Xcc-8004.4819.1 at 4585.549 kb on + strand, within Xcc-8004.4819.1 at 4585.550 kb on - strand, within Xcc-8004.4819.1 at 4585.838 kb on + strand, within Xcc-8004.4819.1 at 4585.931 kb on + strand, within Xcc-8004.4819.1 at 4585.932 kb on - strand, within Xcc-8004.4819.1 at 4585.971 kb on - strand, within Xcc-8004.4819.1 at 4586.036 kb on + strand, within Xcc-8004.4819.1 at 4586.036 kb on + strand, within Xcc-8004.4819.1 at 4586.037 kb on - strand, within Xcc-8004.4819.1 at 4586.037 kb on - strand, within Xcc-8004.4819.1 at 4586.037 kb on - strand, within Xcc-8004.4819.1 at 4586.037 kb on - strand, within Xcc-8004.4819.1 at 4586.037 kb on - strand, within Xcc-8004.4819.1 at 4586.037 kb on - strand, within Xcc-8004.4819.1 at 4586.037 kb on - strand, within Xcc-8004.4819.1 at 4586.037 kb on - strand, within Xcc-8004.4819.1 at 4586.037 kb on - strand, within Xcc-8004.4819.1 at 4586.037 kb on - strand, within Xcc-8004.4819.1 at 4586.037 kb on - strand, within Xcc-8004.4819.1 at 4586.383 kb on - strand, within Xcc-8004.4819.1 at 4586.383 kb on - strand, within Xcc-8004.4819.1 at 4586.390 kb on + strand, within Xcc-8004.4819.1 at 4586.390 kb on + strand, within Xcc-8004.4819.1 at 4586.390 kb on + strand, within Xcc-8004.4819.1 at 4586.390 kb on + strand, within Xcc-8004.4819.1 at 4586.391 kb on - strand, within Xcc-8004.4819.1 at 4586.391 kb on - strand, within Xcc-8004.4819.1 at 4586.393 kb on - strand, within Xcc-8004.4819.1 at 4586.579 kb on + strand at 4586.579 kb on + strand at 4586.579 kb on + strand at 4586.579 kb on + strand at 4586.579 kb on + strand at 4586.580 kb on - strand at 4586.580 kb on - strand at 4586.580 kb on - strand at 4586.580 kb on - strand at 4586.580 kb on - strand at 4586.644 kb on + strand at 4586.644 kb on + strand at 4586.644 kb on + strand at 4586.645 kb on - strand at 4586.645 kb on - strand at 4586.711 kb on + strand at 4586.711 kb on + strand at 4586.712 kb on - strand at 4586.999 kb on - strand, within Xcc-8004.4820.1 at 4586.999 kb on - strand, within Xcc-8004.4820.1 at 4587.159 kb on + strand at 4587.164 kb on + strand at 4587.164 kb on + strand at 4587.164 kb on + strand at 4587.164 kb on + strand at 4587.164 kb on + strand at 4587.164 kb on + strand at 4587.165 kb on - strand at 4587.165 kb on - strand at 4587.165 kb on - strand at 4587.250 kb on + strand at 4587.251 kb on - strand at 4587.251 kb on - strand at 4587.283 kb on + strand at 4587.283 kb on + strand at 4587.283 kb on + strand at 4587.283 kb on + strand at 4587.284 kb on - strand at 4587.284 kb on - strand at 4587.284 kb on - strand at 4587.311 kb on - strand at 4587.311 kb on - strand at 4587.311 kb on - strand at 4587.311 kb on - strand at 4587.330 kb on + strand at 4587.330 kb on + strand at 4587.331 kb on - strand at 4587.331 kb on - strand at 4587.331 kb on - strand at 4587.373 kb on + strand at 4587.428 kb on - strand, within Xcc-8004.4821.1 at 4587.460 kb on + strand, within Xcc-8004.4821.1 at 4587.479 kb on - strand, within Xcc-8004.4821.1 at 4587.499 kb on + strand, within Xcc-8004.4821.1 at 4587.500 kb on - strand, within Xcc-8004.4821.1 at 4587.500 kb on - strand, within Xcc-8004.4821.1 at 4587.500 kb on - strand, within Xcc-8004.4821.1 at 4587.545 kb on - strand, within Xcc-8004.4821.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 4,584,433 - -0.2 4,584,437 + +0.3 4,584,437 + -0.1 4,584,438 - +0.1 4,584,438 - +0.7 4,584,468 + +0.2 4,584,468 + -0.5 4,584,468 + +0.6 4,584,468 + +4.2 4,584,468 + +0.2 4,584,468 + -0.7 4,584,469 - +0.4 4,584,469 - -0.5 4,584,469 - +0.5 4,584,870 + Xcc-8004.4818.1 0.44 -1.3 4,584,871 - Xcc-8004.4818.1 0.44 -1.5 4,584,924 + Xcc-8004.4818.1 0.51 -0.0 4,584,925 - Xcc-8004.4818.1 0.51 -0.9 4,584,925 - Xcc-8004.4818.1 0.51 -0.2 4,584,925 - Xcc-8004.4818.1 0.51 +0.8 4,584,954 + Xcc-8004.4818.1 0.54 +1.7 4,584,954 + Xcc-8004.4818.1 0.54 +0.7 4,584,954 + Xcc-8004.4818.1 0.54 -2.0 4,584,955 - Xcc-8004.4818.1 0.55 -0.0 4,584,955 - Xcc-8004.4818.1 0.55 +0.8 4,585,235 - +0.5 4,585,252 - -1.4 4,585,403 + -1.0 4,585,403 + -1.9 4,585,403 + +0.3 4,585,404 - +0.9 4,585,404 - -0.9 4,585,404 - -0.4 4,585,500 - Xcc-8004.4819.1 0.15 -0.7 4,585,541 + Xcc-8004.4819.1 0.18 -1.3 4,585,541 + Xcc-8004.4819.1 0.18 +0.2 4,585,541 + Xcc-8004.4819.1 0.18 -1.9 4,585,541 + Xcc-8004.4819.1 0.18 +0.0 4,585,541 + Xcc-8004.4819.1 0.18 +0.2 4,585,541 + Xcc-8004.4819.1 0.18 -1.4 4,585,541 + Xcc-8004.4819.1 0.18 +0.2 4,585,541 + Xcc-8004.4819.1 0.18 -0.8 4,585,541 + Xcc-8004.4819.1 0.18 -1.1 4,585,541 + Xcc-8004.4819.1 0.18 +0.5 4,585,542 - Xcc-8004.4819.1 0.18 +0.4 4,585,542 - Xcc-8004.4819.1 0.18 +0.6 4,585,542 - Xcc-8004.4819.1 0.18 +0.6 4,585,542 - Xcc-8004.4819.1 0.18 -0.1 4,585,542 - Xcc-8004.4819.1 0.18 -0.2 4,585,542 - Xcc-8004.4819.1 0.18 +1.2 4,585,542 - Xcc-8004.4819.1 0.18 -0.0 4,585,542 - Xcc-8004.4819.1 0.18 -0.2 4,585,542 - Xcc-8004.4819.1 0.18 +0.4 4,585,542 - Xcc-8004.4819.1 0.18 -0.1 4,585,542 - Xcc-8004.4819.1 0.18 +0.4 4,585,547 + Xcc-8004.4819.1 0.19 +0.8 4,585,547 + Xcc-8004.4819.1 0.19 -0.0 4,585,547 + Xcc-8004.4819.1 0.19 -0.3 4,585,547 + Xcc-8004.4819.1 0.19 -1.3 4,585,548 - Xcc-8004.4819.1 0.19 -0.4 4,585,548 - Xcc-8004.4819.1 0.19 +0.4 4,585,548 - Xcc-8004.4819.1 0.19 -1.2 4,585,549 + Xcc-8004.4819.1 0.19 -0.4 4,585,549 + Xcc-8004.4819.1 0.19 -0.2 4,585,550 - Xcc-8004.4819.1 0.19 -0.5 4,585,838 + Xcc-8004.4819.1 0.41 +1.5 4,585,931 + Xcc-8004.4819.1 0.48 -0.6 4,585,932 - Xcc-8004.4819.1 0.48 +0.5 4,585,971 - Xcc-8004.4819.1 0.51 +0.5 4,586,036 + Xcc-8004.4819.1 0.56 -0.1 4,586,036 + Xcc-8004.4819.1 0.56 -0.5 4,586,037 - Xcc-8004.4819.1 0.56 -0.6 4,586,037 - Xcc-8004.4819.1 0.56 +0.7 4,586,037 - Xcc-8004.4819.1 0.56 +0.4 4,586,037 - Xcc-8004.4819.1 0.56 +0.9 4,586,037 - Xcc-8004.4819.1 0.56 -0.5 4,586,037 - Xcc-8004.4819.1 0.56 -2.3 4,586,037 - Xcc-8004.4819.1 0.56 -0.4 4,586,037 - Xcc-8004.4819.1 0.56 +0.2 4,586,037 - Xcc-8004.4819.1 0.56 +0.4 4,586,037 - Xcc-8004.4819.1 0.56 -0.3 4,586,037 - Xcc-8004.4819.1 0.56 +0.4 4,586,383 - Xcc-8004.4819.1 0.83 +0.2 4,586,383 - Xcc-8004.4819.1 0.83 +0.3 4,586,390 + Xcc-8004.4819.1 0.83 -0.3 4,586,390 + Xcc-8004.4819.1 0.83 +0.9 4,586,390 + Xcc-8004.4819.1 0.83 +0.4 4,586,390 + Xcc-8004.4819.1 0.83 +0.9 4,586,391 - Xcc-8004.4819.1 0.83 -1.0 4,586,391 - Xcc-8004.4819.1 0.83 -0.1 4,586,393 - Xcc-8004.4819.1 0.84 +1.1 4,586,579 + +0.1 4,586,579 + +1.0 4,586,579 + -0.8 4,586,579 + -1.6 4,586,579 + -1.6 4,586,580 - +0.8 4,586,580 - +0.4 4,586,580 - -2.0 4,586,580 - -0.2 4,586,580 - -0.1 4,586,644 + -0.0 4,586,644 + +0.9 4,586,644 + -0.1 4,586,645 - +0.3 4,586,645 - +0.9 4,586,711 + +0.4 4,586,711 + +0.5 4,586,712 - +0.2 4,586,999 - Xcc-8004.4820.1 0.61 -0.4 4,586,999 - Xcc-8004.4820.1 0.61 -1.0 4,587,159 + +0.7 4,587,164 + -0.1 4,587,164 + +0.3 4,587,164 + -0.1 4,587,164 + +0.2 4,587,164 + -1.7 4,587,164 + +0.9 4,587,165 - -1.0 4,587,165 - -0.4 4,587,165 - +0.2 4,587,250 + +1.9 4,587,251 - +0.6 4,587,251 - +0.8 4,587,283 + +1.8 4,587,283 + +0.1 4,587,283 + +0.8 4,587,283 + +0.3 4,587,284 - +0.8 4,587,284 - -0.3 4,587,284 - +1.2 4,587,311 - +0.1 4,587,311 - +1.0 4,587,311 - +0.9 4,587,311 - +1.1 4,587,330 + -0.5 4,587,330 + +0.5 4,587,331 - -0.6 4,587,331 - +0.1 4,587,331 - +0.1 4,587,373 + +0.3 4,587,428 - Xcc-8004.4821.1 0.19 +0.1 4,587,460 + Xcc-8004.4821.1 0.28 +0.6 4,587,479 - Xcc-8004.4821.1 0.34 +1.7 4,587,499 + Xcc-8004.4821.1 0.40 +0.2 4,587,500 - Xcc-8004.4821.1 0.40 +1.5 4,587,500 - Xcc-8004.4821.1 0.40 +0.3 4,587,500 - Xcc-8004.4821.1 0.40 -0.7 4,587,545 - Xcc-8004.4821.1 0.53 +0.2
Or see this region's nucleotide sequence