Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1806.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1805.1 and Xcc-8004.1806.1 are separated by 98 nucleotidesXcc-8004.1806.1 and Xcc-8004.1807.1 are separated by 24 nucleotidesXcc-8004.1807.1 and Xcc-8004.1808.1 overlap by 4 nucleotidesXcc-8004.1808.1 and Xcc-8004.1809.1 are separated by 146 nucleotides Xcc-8004.1805.1: Xcc-8004.1805.1 - Transcriptional regulator, LysR family, at 1,741,641 to 1,742,573 Xcc-8004.1805.1 Xcc-8004.1806.1: Xcc-8004.1806.1 - MFS transporter, at 1,742,672 to 1,743,880 Xcc-8004.1806.1 Xcc-8004.1807.1: Xcc-8004.1807.1 - L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122), at 1,743,905 to 1,744,150 Xcc-8004.1807.1 Xcc-8004.1808.1: Xcc-8004.1808.1 - L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122), at 1,744,147 to 1,744,494 Xcc-8004.1808.1 Xcc-8004.1809.1: Xcc-8004.1809.1 - extracellular serine protease, at 1,744,641 to 1,745,030 Xcc-8004.1809.1 Position (kb) 1742 1743 1744Strain fitness (log2 ratio) -2 -1 0 1 2at 1741.938 kb on + strand, within Xcc-8004.1805.1at 1741.938 kb on + strand, within Xcc-8004.1805.1at 1741.939 kb on - strand, within Xcc-8004.1805.1at 1742.257 kb on + strand, within Xcc-8004.1805.1at 1742.257 kb on + strand, within Xcc-8004.1805.1at 1742.258 kb on - strand, within Xcc-8004.1805.1at 1742.258 kb on - strand, within Xcc-8004.1805.1at 1742.258 kb on - strand, within Xcc-8004.1805.1at 1742.608 kb on + strandat 1742.686 kb on + strandat 1742.686 kb on + strandat 1742.686 kb on + strandat 1742.686 kb on + strandat 1742.686 kb on + strandat 1742.687 kb on - strandat 1742.687 kb on - strandat 1742.687 kb on - strandat 1742.687 kb on - strandat 1742.687 kb on - strandat 1742.941 kb on + strand, within Xcc-8004.1806.1at 1742.941 kb on + strand, within Xcc-8004.1806.1at 1742.942 kb on - strand, within Xcc-8004.1806.1at 1742.942 kb on - strand, within Xcc-8004.1806.1at 1742.966 kb on + strand, within Xcc-8004.1806.1at 1742.966 kb on + strand, within Xcc-8004.1806.1at 1742.967 kb on - strand, within Xcc-8004.1806.1at 1743.333 kb on - strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.359 kb on + strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.360 kb on - strand, within Xcc-8004.1806.1at 1743.362 kb on - strand, within Xcc-8004.1806.1at 1743.362 kb on - strand, within Xcc-8004.1806.1at 1743.362 kb on - strand, within Xcc-8004.1806.1at 1743.685 kb on + strand, within Xcc-8004.1806.1at 1744.264 kb on + strand, within Xcc-8004.1808.1at 1744.265 kb on - strand, within Xcc-8004.1808.1at 1744.265 kb on - strand, within Xcc-8004.1808.1at 1744.442 kb on + strand, within Xcc-8004.1808.1at 1744.517 kb on + strandat 1744.518 kb on - strandat 1744.590 kb on - strandat 1744.632 kb on - strandat 1744.632 kb on - strandat 1744.642 kb on + strandat 1744.643 kb on - strandat 1744.643 kb on - strandat 1744.643 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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1,741,938 + Xcc-8004.1805.1 0.32 +0.1
1,741,938 + Xcc-8004.1805.1 0.32 +0.5
1,741,939 - Xcc-8004.1805.1 0.32 -0.1
1,742,257 + Xcc-8004.1805.1 0.66 +1.0
1,742,257 + Xcc-8004.1805.1 0.66 +0.9
1,742,258 - Xcc-8004.1805.1 0.66 +0.2
1,742,258 - Xcc-8004.1805.1 0.66 +0.7
1,742,258 - Xcc-8004.1805.1 0.66 -2.0
1,742,608 + -0.5
1,742,686 + +0.4
1,742,686 + -0.3
1,742,686 + -0.2
1,742,686 + -1.5
1,742,686 + -0.8
1,742,687 - -0.7
1,742,687 - -1.4
1,742,687 - -0.8
1,742,687 - -0.7
1,742,687 - +0.5
1,742,941 + Xcc-8004.1806.1 0.22 -1.4
1,742,941 + Xcc-8004.1806.1 0.22 -1.0
1,742,942 - Xcc-8004.1806.1 0.22 -1.6
1,742,942 - Xcc-8004.1806.1 0.22 -1.4
1,742,966 + Xcc-8004.1806.1 0.24 +0.5
1,742,966 + Xcc-8004.1806.1 0.24 -1.0
1,742,967 - Xcc-8004.1806.1 0.24 +0.3
1,743,333 - Xcc-8004.1806.1 0.55 +0.2
1,743,359 + Xcc-8004.1806.1 0.57 -1.3
1,743,359 + Xcc-8004.1806.1 0.57 -0.6
1,743,359 + Xcc-8004.1806.1 0.57 -0.4
1,743,359 + Xcc-8004.1806.1 0.57 +1.4
1,743,359 + Xcc-8004.1806.1 0.57 +0.1
1,743,359 + Xcc-8004.1806.1 0.57 -1.7
1,743,359 + Xcc-8004.1806.1 0.57 -1.2
1,743,359 + Xcc-8004.1806.1 0.57 -0.2
1,743,359 + Xcc-8004.1806.1 0.57 -0.2
1,743,360 - Xcc-8004.1806.1 0.57 +0.2
1,743,360 - Xcc-8004.1806.1 0.57 -1.7
1,743,360 - Xcc-8004.1806.1 0.57 -0.4
1,743,360 - Xcc-8004.1806.1 0.57 -0.4
1,743,360 - Xcc-8004.1806.1 0.57 -2.4
1,743,360 - Xcc-8004.1806.1 0.57 +0.1
1,743,360 - Xcc-8004.1806.1 0.57 -0.6
1,743,362 - Xcc-8004.1806.1 0.57 +0.5
1,743,362 - Xcc-8004.1806.1 0.57 +1.0
1,743,362 - Xcc-8004.1806.1 0.57 -0.6
1,743,685 + Xcc-8004.1806.1 0.84 +0.1
1,744,264 + Xcc-8004.1808.1 0.34 -1.2
1,744,265 - Xcc-8004.1808.1 0.34 -0.7
1,744,265 - Xcc-8004.1808.1 0.34 -0.6
1,744,442 + Xcc-8004.1808.1 0.85 -0.0
1,744,517 + -0.2
1,744,518 - +0.4
1,744,590 - +2.0
1,744,632 - -0.9
1,744,632 - -0.0
1,744,642 + -0.6
1,744,643 - -1.0
1,744,643 - -0.3
1,744,643 - +0.3

Or see this region's nucleotide sequence