Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS26030

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18435 and RS_RS18440 overlap by 4 nucleotidesRS_RS18440 and RS_RS26030 are separated by 96 nucleotidesRS_RS26030 and RS_RS18445 are separated by 13 nucleotides RS_RS18435: RS_RS18435 - hypothetical protein, at 341,213 to 342,325 _RS18435 RS_RS18440: RS_RS18440 - hypothetical protein, at 342,322 to 343,185 _RS18440 RS_RS26030: RS_RS26030 - hypothetical protein, at 343,282 to 343,961 _RS26030 RS_RS18445: RS_RS18445 - TIGR02679 family protein, at 343,975 to 345,279 _RS18445 Position (kb) 343 344Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 342.405 kb on + strandat 342.454 kb on + strand, within RS_RS18440at 342.455 kb on - strand, within RS_RS18440at 342.455 kb on - strand, within RS_RS18440at 342.510 kb on - strand, within RS_RS18440at 342.510 kb on - strand, within RS_RS18440at 342.607 kb on + strand, within RS_RS18440at 342.608 kb on - strand, within RS_RS18440at 342.744 kb on + strand, within RS_RS18440at 342.745 kb on - strand, within RS_RS18440at 342.760 kb on + strand, within RS_RS18440at 342.760 kb on + strand, within RS_RS18440at 342.760 kb on + strand, within RS_RS18440at 342.760 kb on + strand, within RS_RS18440at 342.760 kb on + strand, within RS_RS18440at 342.761 kb on - strand, within RS_RS18440at 342.761 kb on - strand, within RS_RS18440at 342.761 kb on - strand, within RS_RS18440at 342.761 kb on - strand, within RS_RS18440at 342.761 kb on - strand, within RS_RS18440at 342.761 kb on - strand, within RS_RS18440at 342.877 kb on + strand, within RS_RS18440at 342.893 kb on - strand, within RS_RS18440at 342.923 kb on - strand, within RS_RS18440at 342.923 kb on - strand, within RS_RS18440at 342.959 kb on - strand, within RS_RS18440at 343.045 kb on - strand, within RS_RS18440at 343.066 kb on + strand, within RS_RS18440at 343.066 kb on + strand, within RS_RS18440at 343.066 kb on + strand, within RS_RS18440at 343.066 kb on + strand, within RS_RS18440at 343.184 kb on - strandat 343.340 kb on - strandat 343.348 kb on + strandat 343.455 kb on - strand, within RS_RS26030at 343.455 kb on - strand, within RS_RS26030at 343.460 kb on + strand, within RS_RS26030at 343.460 kb on + strand, within RS_RS26030at 343.461 kb on - strand, within RS_RS26030at 343.461 kb on - strand, within RS_RS26030at 343.528 kb on + strand, within RS_RS26030at 343.528 kb on + strand, within RS_RS26030at 343.528 kb on + strand, within RS_RS26030at 343.528 kb on + strand, within RS_RS26030at 343.528 kb on + strand, within RS_RS26030at 343.528 kb on + strand, within RS_RS26030at 343.529 kb on - strand, within RS_RS26030at 343.529 kb on - strand, within RS_RS26030at 343.529 kb on - strand, within RS_RS26030at 343.529 kb on - strand, within RS_RS26030at 343.529 kb on - strand, within RS_RS26030at 343.529 kb on - strand, within RS_RS26030at 343.529 kb on - strand, within RS_RS26030at 343.529 kb on - strand, within RS_RS26030at 343.529 kb on - strand, within RS_RS26030at 343.529 kb on - strand, within RS_RS26030at 343.532 kb on + strand, within RS_RS26030at 343.532 kb on + strand, within RS_RS26030at 343.532 kb on + strand, within RS_RS26030at 343.532 kb on + strand, within RS_RS26030at 343.532 kb on + strand, within RS_RS26030at 343.532 kb on + strand, within RS_RS26030at 343.533 kb on - strand, within RS_RS26030at 343.533 kb on - strand, within RS_RS26030at 343.533 kb on - strand, within RS_RS26030at 343.533 kb on - strand, within RS_RS26030at 343.533 kb on - strand, within RS_RS26030at 343.533 kb on - strand, within RS_RS26030at 343.533 kb on - strand, within RS_RS26030at 343.644 kb on + strand, within RS_RS26030at 343.645 kb on - strand, within RS_RS26030at 343.645 kb on - strand, within RS_RS26030at 343.645 kb on - strand, within RS_RS26030at 343.749 kb on + strand, within RS_RS26030at 343.883 kb on + strand, within RS_RS26030at 343.883 kb on + strand, within RS_RS26030at 343.884 kb on - strand, within RS_RS26030at 343.884 kb on - strand, within RS_RS26030at 343.884 kb on - strand, within RS_RS26030at 343.884 kb on - strand, within RS_RS26030at 343.987 kb on + strandat 343.987 kb on + strandat 344.032 kb on + strandat 344.033 kb on - strandat 344.049 kb on + strandat 344.050 kb on - strandat 344.050 kb on - strandat 344.141 kb on + strand, within RS_RS18445at 344.142 kb on - strand, within RS_RS18445at 344.234 kb on + strand, within RS_RS18445at 344.234 kb on + strand, within RS_RS18445at 344.234 kb on + strand, within RS_RS18445at 344.237 kb on + strand, within RS_RS18445at 344.237 kb on + strand, within RS_RS18445at 344.238 kb on - strand, within RS_RS18445at 344.238 kb on - strand, within RS_RS18445at 344.260 kb on + strand, within RS_RS18445at 344.260 kb on + strand, within RS_RS18445at 344.261 kb on - strand, within RS_RS18445at 344.261 kb on - strand, within RS_RS18445at 344.261 kb on - strand, within RS_RS18445at 344.418 kb on + strand, within RS_RS18445at 344.444 kb on + strand, within RS_RS18445at 344.445 kb on - strand, within RS_RS18445at 344.445 kb on - strand, within RS_RS18445at 344.445 kb on - strand, within RS_RS18445

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
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342,405 + -1.3
342,454 + RS_RS18440 0.15 +0.1
342,455 - RS_RS18440 0.15 -0.5
342,455 - RS_RS18440 0.15 -0.6
342,510 - RS_RS18440 0.22 -3.0
342,510 - RS_RS18440 0.22 -0.1
342,607 + RS_RS18440 0.33 +1.6
342,608 - RS_RS18440 0.33 +0.8
342,744 + RS_RS18440 0.49 +1.4
342,745 - RS_RS18440 0.49 -0.6
342,760 + RS_RS18440 0.51 +0.5
342,760 + RS_RS18440 0.51 -0.2
342,760 + RS_RS18440 0.51 +0.1
342,760 + RS_RS18440 0.51 +0.3
342,760 + RS_RS18440 0.51 +0.3
342,761 - RS_RS18440 0.51 +0.1
342,761 - RS_RS18440 0.51 -0.6
342,761 - RS_RS18440 0.51 +1.4
342,761 - RS_RS18440 0.51 -2.4
342,761 - RS_RS18440 0.51 -0.4
342,761 - RS_RS18440 0.51 -0.4
342,877 + RS_RS18440 0.64 -0.7
342,893 - RS_RS18440 0.66 -0.6
342,923 - RS_RS18440 0.70 +0.3
342,923 - RS_RS18440 0.70 -0.4
342,959 - RS_RS18440 0.74 -0.3
343,045 - RS_RS18440 0.84 -0.6
343,066 + RS_RS18440 0.86 -0.5
343,066 + RS_RS18440 0.86 +1.1
343,066 + RS_RS18440 0.86 +0.7
343,066 + RS_RS18440 0.86 +0.2
343,184 - +0.3
343,340 - +1.3
343,348 + -1.5
343,455 - RS_RS26030 0.25 +0.8
343,455 - RS_RS26030 0.25 -1.1
343,460 + RS_RS26030 0.26 +0.7
343,460 + RS_RS26030 0.26 -1.9
343,461 - RS_RS26030 0.26 -0.0
343,461 - RS_RS26030 0.26 +0.4
343,528 + RS_RS26030 0.36 +0.0
343,528 + RS_RS26030 0.36 -0.3
343,528 + RS_RS26030 0.36 +0.2
343,528 + RS_RS26030 0.36 -2.6
343,528 + RS_RS26030 0.36 -0.6
343,528 + RS_RS26030 0.36 -0.0
343,529 - RS_RS26030 0.36 -2.5
343,529 - RS_RS26030 0.36 +2.1
343,529 - RS_RS26030 0.36 -0.5
343,529 - RS_RS26030 0.36 +0.4
343,529 - RS_RS26030 0.36 -1.0
343,529 - RS_RS26030 0.36 +1.4
343,529 - RS_RS26030 0.36 -0.1
343,529 - RS_RS26030 0.36 +1.0
343,529 - RS_RS26030 0.36 -0.5
343,529 - RS_RS26030 0.36 -2.8
343,532 + RS_RS26030 0.37 +0.7
343,532 + RS_RS26030 0.37 +0.4
343,532 + RS_RS26030 0.37 +0.7
343,532 + RS_RS26030 0.37 +0.4
343,532 + RS_RS26030 0.37 +0.3
343,532 + RS_RS26030 0.37 -1.8
343,533 - RS_RS26030 0.37 -1.5
343,533 - RS_RS26030 0.37 -0.7
343,533 - RS_RS26030 0.37 -2.7
343,533 - RS_RS26030 0.37 -0.4
343,533 - RS_RS26030 0.37 +0.2
343,533 - RS_RS26030 0.37 -0.6
343,533 - RS_RS26030 0.37 +0.7
343,644 + RS_RS26030 0.53 +1.1
343,645 - RS_RS26030 0.53 +0.1
343,645 - RS_RS26030 0.53 -2.1
343,645 - RS_RS26030 0.53 -0.2
343,749 + RS_RS26030 0.69 +0.5
343,883 + RS_RS26030 0.88 -0.5
343,883 + RS_RS26030 0.88 +1.2
343,884 - RS_RS26030 0.89 +0.0
343,884 - RS_RS26030 0.89 +0.3
343,884 - RS_RS26030 0.89 -1.5
343,884 - RS_RS26030 0.89 +0.8
343,987 + -1.0
343,987 + +1.0
344,032 + +0.2
344,033 - +1.9
344,049 + +1.2
344,050 - +0.5
344,050 - +0.3
344,141 + RS_RS18445 0.13 -0.2
344,142 - RS_RS18445 0.13 +1.0
344,234 + RS_RS18445 0.20 -0.8
344,234 + RS_RS18445 0.20 +0.1
344,234 + RS_RS18445 0.20 +0.8
344,237 + RS_RS18445 0.20 +0.5
344,237 + RS_RS18445 0.20 -0.1
344,238 - RS_RS18445 0.20 +0.9
344,238 - RS_RS18445 0.20 -0.2
344,260 + RS_RS18445 0.22 -0.3
344,260 + RS_RS18445 0.22 -0.5
344,261 - RS_RS18445 0.22 +0.2
344,261 - RS_RS18445 0.22 +0.4
344,261 - RS_RS18445 0.22 -1.0
344,418 + RS_RS18445 0.34 +1.0
344,444 + RS_RS18445 0.36 +0.0
344,445 - RS_RS18445 0.36 +1.0
344,445 - RS_RS18445 0.36 +0.4
344,445 - RS_RS18445 0.36 +2.1

Or see this region's nucleotide sequence