Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS21750 and RS_RS21755 are separated by 114 nucleotides RS_RS21755 and RS_RS21760 are separated by 391 nucleotides
RS_RS21750: RS_RS21750 - glycine C-acetyltransferase, at 1,213,294 to 1,214,493
_RS21750
RS_RS21755: RS_RS21755 - XRE family transcriptional regulator, at 1,214,608 to 1,215,213
_RS21755
RS_RS21760: RS_RS21760 - ribonucleoside triphosphate reductase, at 1,215,605 to 1,217,656
_RS21760
Position (kb) 1214
1215
1216 Strain fitness (log2 ratio) -2
-1
0
1 at 1213.676 kb on + strand, within RS_RS21750 at 1213.804 kb on + strand, within RS_RS21750 at 1213.805 kb on - strand, within RS_RS21750 at 1214.165 kb on + strand, within RS_RS21750 at 1214.166 kb on - strand, within RS_RS21750 at 1214.277 kb on + strand, within RS_RS21750 at 1214.277 kb on + strand, within RS_RS21750 at 1214.333 kb on + strand, within RS_RS21750 at 1214.334 kb on - strand, within RS_RS21750 at 1214.334 kb on - strand, within RS_RS21750 at 1214.425 kb on + strand at 1214.426 kb on - strand at 1214.471 kb on + strand at 1214.471 kb on + strand at 1214.471 kb on + strand at 1214.471 kb on + strand at 1214.471 kb on + strand at 1214.472 kb on - strand at 1214.472 kb on - strand at 1214.472 kb on - strand at 1214.538 kb on - strand at 1214.551 kb on + strand at 1214.944 kb on - strand, within RS_RS21755 at 1214.944 kb on - strand, within RS_RS21755 at 1214.983 kb on + strand, within RS_RS21755 at 1214.984 kb on - strand, within RS_RS21755 at 1215.590 kb on + strand at 1215.593 kb on - strand at 1215.848 kb on + strand, within RS_RS21760 at 1215.849 kb on - strand, within RS_RS21760 at 1215.849 kb on - strand, within RS_RS21760 at 1215.850 kb on + strand, within RS_RS21760 at 1215.850 kb on + strand, within RS_RS21760 at 1215.850 kb on + strand, within RS_RS21760 at 1215.851 kb on - strand, within RS_RS21760 at 1215.851 kb on - strand, within RS_RS21760 at 1215.851 kb on - strand, within RS_RS21760 at 1215.857 kb on + strand, within RS_RS21760 at 1215.857 kb on + strand, within RS_RS21760 at 1215.858 kb on - strand, within RS_RS21760 at 1215.929 kb on + strand, within RS_RS21760 at 1215.929 kb on + strand, within RS_RS21760 at 1215.930 kb on - strand, within RS_RS21760 at 1215.978 kb on - strand, within RS_RS21760 at 1216.028 kb on + strand, within RS_RS21760 at 1216.046 kb on + strand, within RS_RS21760 at 1216.047 kb on - strand, within RS_RS21760 at 1216.204 kb on + strand, within RS_RS21760 at 1216.204 kb on + strand, within RS_RS21760 at 1216.205 kb on - strand, within RS_RS21760
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 1,213,676 + RS_RS21750 0.32 -0.2 1,213,804 + RS_RS21750 0.42 -0.1 1,213,805 - RS_RS21750 0.43 -0.5 1,214,165 + RS_RS21750 0.73 -0.3 1,214,166 - RS_RS21750 0.73 -0.6 1,214,277 + RS_RS21750 0.82 -0.7 1,214,277 + RS_RS21750 0.82 -0.3 1,214,333 + RS_RS21750 0.87 +0.9 1,214,334 - RS_RS21750 0.87 +0.4 1,214,334 - RS_RS21750 0.87 -1.1 1,214,425 + +0.6 1,214,426 - -0.5 1,214,471 + +0.4 1,214,471 + +0.3 1,214,471 + -0.8 1,214,471 + -0.5 1,214,471 + -1.2 1,214,472 - +1.4 1,214,472 - +0.0 1,214,472 - +1.3 1,214,538 - -0.5 1,214,551 + -1.4 1,214,944 - RS_RS21755 0.55 -1.2 1,214,944 - RS_RS21755 0.55 -1.8 1,214,983 + RS_RS21755 0.62 -1.2 1,214,984 - RS_RS21755 0.62 -0.7 1,215,590 + -0.0 1,215,593 - +0.7 1,215,848 + RS_RS21760 0.12 +0.0 1,215,849 - RS_RS21760 0.12 +0.5 1,215,849 - RS_RS21760 0.12 -0.9 1,215,850 + RS_RS21760 0.12 -0.4 1,215,850 + RS_RS21760 0.12 -0.2 1,215,850 + RS_RS21760 0.12 +0.6 1,215,851 - RS_RS21760 0.12 -1.0 1,215,851 - RS_RS21760 0.12 +0.4 1,215,851 - RS_RS21760 0.12 +1.2 1,215,857 + RS_RS21760 0.12 +0.6 1,215,857 + RS_RS21760 0.12 -1.0 1,215,858 - RS_RS21760 0.12 +0.4 1,215,929 + RS_RS21760 0.16 -0.1 1,215,929 + RS_RS21760 0.16 -0.1 1,215,930 - RS_RS21760 0.16 -0.2 1,215,978 - RS_RS21760 0.18 +1.0 1,216,028 + RS_RS21760 0.21 -1.5 1,216,046 + RS_RS21760 0.21 +0.1 1,216,047 - RS_RS21760 0.22 -1.9 1,216,204 + RS_RS21760 0.29 -2.0 1,216,204 + RS_RS21760 0.29 -1.1 1,216,205 - RS_RS21760 0.29 +0.3
Or see this region's nucleotide sequence