Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18250 and RS_RS18255 are separated by 288 nucleotides RS_RS18255 and RS_RS18260 are separated by 103 nucleotides RS_RS18260 and RS_RS18265 are separated by 123 nucleotides
RS_RS18250: RS_RS18250 - sigma-54-dependent Fis family transcriptional regulator, at 284,279 to 286,150
_RS18250
RS_RS18255: RS_RS18255 - benzaldehyde dehydrogenase, at 286,439 to 287,917
_RS18255
RS_RS18260: RS_RS18260 - 3-alpha-hydroxysteroid dehydrogenase, at 288,021 to 288,788
_RS18260
RS_RS18265: RS_RS18265 - hypothetical protein, at 288,912 to 289,871
_RS18265
Position (kb) 286
287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 285.664 kb on - strand, within RS_RS18250 at 285.664 kb on - strand, within RS_RS18250 at 285.721 kb on - strand, within RS_RS18250 at 285.721 kb on - strand, within RS_RS18250 at 285.741 kb on + strand, within RS_RS18250 at 285.741 kb on + strand, within RS_RS18250 at 285.741 kb on + strand, within RS_RS18250 at 285.741 kb on + strand, within RS_RS18250 at 285.877 kb on - strand, within RS_RS18250 at 286.020 kb on + strand at 286.020 kb on + strand at 286.020 kb on + strand at 286.020 kb on + strand at 286.021 kb on - strand at 286.187 kb on - strand at 286.226 kb on + strand at 286.871 kb on + strand, within RS_RS18255 at 286.872 kb on - strand, within RS_RS18255 at 287.528 kb on + strand, within RS_RS18255 at 287.529 kb on - strand, within RS_RS18255 at 287.543 kb on + strand, within RS_RS18255 at 287.861 kb on + strand at 287.861 kb on + strand at 287.861 kb on + strand at 287.862 kb on - strand at 287.862 kb on - strand at 288.159 kb on + strand, within RS_RS18260 at 288.294 kb on + strand, within RS_RS18260 at 288.294 kb on + strand, within RS_RS18260 at 288.294 kb on + strand, within RS_RS18260 at 288.294 kb on + strand, within RS_RS18260 at 288.294 kb on + strand, within RS_RS18260 at 288.295 kb on - strand, within RS_RS18260 at 288.489 kb on + strand, within RS_RS18260 at 288.495 kb on + strand, within RS_RS18260 at 288.496 kb on - strand, within RS_RS18260 at 288.679 kb on - strand, within RS_RS18260 at 288.780 kb on + strand at 288.781 kb on - strand at 288.781 kb on - strand at 288.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 285,664 - RS_RS18250 0.74 -0.3 285,664 - RS_RS18250 0.74 +0.5 285,721 - RS_RS18250 0.77 +1.5 285,721 - RS_RS18250 0.77 -0.5 285,741 + RS_RS18250 0.78 +0.2 285,741 + RS_RS18250 0.78 -0.4 285,741 + RS_RS18250 0.78 +1.7 285,741 + RS_RS18250 0.78 +1.0 285,877 - RS_RS18250 0.85 -0.2 286,020 + -0.2 286,020 + +0.9 286,020 + -0.6 286,020 + +0.5 286,021 - -3.4 286,187 - -0.1 286,226 + -1.9 286,871 + RS_RS18255 0.29 +0.6 286,872 - RS_RS18255 0.29 -0.7 287,528 + RS_RS18255 0.74 -0.2 287,529 - RS_RS18255 0.74 -1.7 287,543 + RS_RS18255 0.75 -0.7 287,861 + +1.4 287,861 + +0.3 287,861 + +0.7 287,862 - -0.6 287,862 - +0.4 288,159 + RS_RS18260 0.18 +0.2 288,294 + RS_RS18260 0.36 +0.6 288,294 + RS_RS18260 0.36 -0.8 288,294 + RS_RS18260 0.36 -1.1 288,294 + RS_RS18260 0.36 -1.7 288,294 + RS_RS18260 0.36 +0.6 288,295 - RS_RS18260 0.36 +0.1 288,489 + RS_RS18260 0.61 -0.6 288,495 + RS_RS18260 0.62 -1.1 288,496 - RS_RS18260 0.62 -0.1 288,679 - RS_RS18260 0.86 -0.4 288,780 + +1.0 288,781 - +1.6 288,781 - -0.2 288,781 - +1.1
Or see this region's nucleotide sequence