Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17480 and RS_RS17485 are separated by 4 nucleotides RS_RS17485 and RS_RS17490 overlap by 4 nucleotides RS_RS17490 and RS_RS17495 are separated by 52 nucleotides
RS_RS17480: RS_RS17480 - DUF3483 domain-containing protein, at 67,080 to 69,005
_RS17480
RS_RS17485: RS_RS17485 - electron transfer flavoprotein subunit alpha/FixB family protein, at 69,010 to 70,188
_RS17485
RS_RS17490: RS_RS17490 - electron transfer flavoprotein subunit beta/FixA family protein, at 70,185 to 70,970
_RS17490
RS_RS17495: RS_RS17495 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 71,023 to 72,267
_RS17495
Position (kb) 69
70
71 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 68.241 kb on + strand, within RS_RS17480 at 68.346 kb on - strand, within RS_RS17480 at 68.392 kb on - strand, within RS_RS17480 at 68.508 kb on + strand, within RS_RS17480 at 68.509 kb on - strand, within RS_RS17480 at 68.509 kb on - strand, within RS_RS17480 at 68.607 kb on + strand, within RS_RS17480 at 68.682 kb on + strand, within RS_RS17480 at 68.697 kb on + strand, within RS_RS17480 at 68.709 kb on + strand, within RS_RS17480 at 68.710 kb on - strand, within RS_RS17480 at 69.054 kb on + strand at 69.441 kb on + strand, within RS_RS17485 at 69.441 kb on + strand, within RS_RS17485 at 69.490 kb on + strand, within RS_RS17485 at 69.559 kb on + strand, within RS_RS17485 at 69.559 kb on + strand, within RS_RS17485 at 69.559 kb on + strand, within RS_RS17485 at 69.559 kb on + strand, within RS_RS17485 at 69.560 kb on - strand, within RS_RS17485 at 69.560 kb on - strand, within RS_RS17485 at 69.560 kb on - strand, within RS_RS17485 at 69.805 kb on - strand, within RS_RS17485 at 69.937 kb on + strand, within RS_RS17485 at 69.951 kb on + strand, within RS_RS17485 at 70.263 kb on + strand at 70.506 kb on + strand at 70.646 kb on + strand, within RS_RS17490 at 70.646 kb on + strand, within RS_RS17490 at 70.646 kb on + strand, within RS_RS17490 at 70.647 kb on - strand, within RS_RS17490 at 70.702 kb on - strand, within RS_RS17490 at 70.708 kb on - strand, within RS_RS17490 at 70.708 kb on - strand, within RS_RS17490 at 70.895 kb on - strand at 70.895 kb on - strand at 70.895 kb on - strand at 70.938 kb on + strand at 71.030 kb on + strand at 71.074 kb on + strand at 71.075 kb on - strand at 71.075 kb on - strand at 71.075 kb on - strand at 71.095 kb on + strand at 71.095 kb on + strand at 71.096 kb on - strand at 71.096 kb on - strand at 71.096 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 68,241 + RS_RS17480 0.60 -0.8 68,346 - RS_RS17480 0.66 +0.5 68,392 - RS_RS17480 0.68 -0.6 68,508 + RS_RS17480 0.74 -1.8 68,509 - RS_RS17480 0.74 -0.7 68,509 - RS_RS17480 0.74 +1.0 68,607 + RS_RS17480 0.79 +1.1 68,682 + RS_RS17480 0.83 -0.6 68,697 + RS_RS17480 0.84 +1.0 68,709 + RS_RS17480 0.85 +0.1 68,710 - RS_RS17480 0.85 +1.9 69,054 + +0.1 69,441 + RS_RS17485 0.37 +1.2 69,441 + RS_RS17485 0.37 +0.0 69,490 + RS_RS17485 0.41 +0.3 69,559 + RS_RS17485 0.47 +0.6 69,559 + RS_RS17485 0.47 +0.2 69,559 + RS_RS17485 0.47 -0.9 69,559 + RS_RS17485 0.47 +0.6 69,560 - RS_RS17485 0.47 -0.3 69,560 - RS_RS17485 0.47 -1.0 69,560 - RS_RS17485 0.47 -1.7 69,805 - RS_RS17485 0.67 -2.3 69,937 + RS_RS17485 0.79 -0.2 69,951 + RS_RS17485 0.80 -0.6 70,263 + +0.9 70,506 + +3.5 70,646 + RS_RS17490 0.59 +0.2 70,646 + RS_RS17490 0.59 -0.2 70,646 + RS_RS17490 0.59 +1.2 70,647 - RS_RS17490 0.59 -0.9 70,702 - RS_RS17490 0.66 +0.7 70,708 - RS_RS17490 0.67 +0.4 70,708 - RS_RS17490 0.67 +0.8 70,895 - +0.9 70,895 - -0.5 70,895 - -1.5 70,938 + -0.2 71,030 + -0.2 71,074 + +0.9 71,075 - +1.1 71,075 - -0.4 71,075 - +0.1 71,095 + +0.2 71,095 + -0.8 71,096 - +0.7 71,096 - +0.4 71,096 - +1.3
Or see this region's nucleotide sequence