Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS14360

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS14355 and RS_RS14360 are separated by 422 nucleotidesRS_RS14360 and RS_RS14365 are separated by 113 nucleotides RS_RS14355: RS_RS14355 - amidohydrolase, at 3,094,267 to 3,095,457 _RS14355 RS_RS14360: RS_RS14360 - 5S ribosomal RNA, at 3,095,880 to 3,095,992 _RS14360 RS_RS14365: RS_RS14365 - 23S ribosomal RNA, at 3,096,106 to 3,098,997 _RS14365 Position (kb) 3095 3096Strain fitness (log2 ratio) -1 0 1at 3094.904 kb on + strand, within RS_RS14355at 3095.147 kb on - strand, within RS_RS14355at 3095.417 kb on - strandat 3095.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
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3,094,904 + RS_RS14355 0.53 -1.7
3,095,147 - RS_RS14355 0.74 +0.2
3,095,417 - -0.1
3,095,559 + +0.3

Or see this region's nucleotide sequence