Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS10360

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS10345 and RS_RS10350 are separated by 167 nucleotidesRS_RS10350 and RS_RS10355 are separated by 171 nucleotidesRS_RS10355 and RS_RS10360 are separated by 65 nucleotidesRS_RS10360 and RS_RS10365 are separated by 101 nucleotides RS_RS10345: RS_RS10345 - NADH-quinone oxidoreductase subunit A, at 2,235,576 to 2,235,935 _RS10345 RS_RS10350: RS_RS10350 - tRNA-Leu, at 2,236,103 to 2,236,187 _RS10350 RS_RS10355: RS_RS10355 - preprotein translocase subunit SecG, at 2,236,359 to 2,236,706 _RS10355 RS_RS10360: RS_RS10360 - triose-phosphate isomerase, at 2,236,772 to 2,237,518 _RS10360 RS_RS10365: RS_RS10365 - NAD(P)H quinone oxidoreductase, at 2,237,620 to 2,238,624 _RS10365 Position (kb) 2236 2237 2238Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2237.562 kb on + strandat 2237.622 kb on - strandat 2237.942 kb on + strand, within RS_RS10365at 2237.942 kb on + strand, within RS_RS10365at 2237.943 kb on - strand, within RS_RS10365

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
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2,237,562 + -1.4
2,237,622 - +0.4
2,237,942 + RS_RS10365 0.32 -0.8
2,237,942 + RS_RS10365 0.32 +0.3
2,237,943 - RS_RS10365 0.32 -4.0

Or see this region's nucleotide sequence