Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01660 and RS_RS01665 are separated by 143 nucleotides RS_RS01665 and RS_RS01670 are separated by 209 nucleotides
RS_RS01660: RS_RS01660 - polyphenol oxidase, at 368,449 to 369,939
_RS01660
RS_RS01665: RS_RS01665 - ATP-dependent protease, at 370,083 to 371,615
_RS01665
RS_RS01670: RS_RS01670 - hypothetical protein, at 371,825 to 372,340
_RS01670
Position (kb) 370
371
372 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 369.086 kb on + strand, within RS_RS01660 at 369.086 kb on + strand, within RS_RS01660 at 369.086 kb on + strand, within RS_RS01660 at 369.086 kb on + strand, within RS_RS01660 at 369.087 kb on - strand, within RS_RS01660 at 369.087 kb on - strand, within RS_RS01660 at 369.401 kb on + strand, within RS_RS01660 at 369.401 kb on + strand, within RS_RS01660 at 369.486 kb on - strand, within RS_RS01660 at 369.510 kb on - strand, within RS_RS01660 at 369.510 kb on - strand, within RS_RS01660 at 369.584 kb on + strand, within RS_RS01660 at 369.614 kb on + strand, within RS_RS01660 at 369.615 kb on - strand, within RS_RS01660 at 369.650 kb on + strand, within RS_RS01660 at 369.650 kb on + strand, within RS_RS01660 at 369.651 kb on - strand, within RS_RS01660 at 369.651 kb on - strand, within RS_RS01660 at 369.671 kb on + strand, within RS_RS01660 at 369.672 kb on - strand, within RS_RS01660 at 369.672 kb on - strand, within RS_RS01660 at 369.677 kb on + strand, within RS_RS01660 at 369.678 kb on - strand, within RS_RS01660 at 369.693 kb on + strand, within RS_RS01660 at 369.694 kb on - strand, within RS_RS01660 at 369.883 kb on + strand at 369.927 kb on + strand at 369.928 kb on - strand at 369.928 kb on - strand at 370.199 kb on - strand at 371.236 kb on + strand, within RS_RS01665 at 371.236 kb on + strand, within RS_RS01665 at 371.237 kb on - strand, within RS_RS01665 at 371.237 kb on - strand, within RS_RS01665 at 371.237 kb on - strand, within RS_RS01665 at 371.237 kb on - strand, within RS_RS01665 at 371.692 kb on + strand at 371.739 kb on + strand at 371.740 kb on - strand at 372.324 kb on + strand at 372.371 kb on + strand at 372.372 kb on - strand at 372.520 kb on + strand at 372.520 kb on + strand at 372.521 kb on - strand at 372.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 369,086 + RS_RS01660 0.43 -0.1 369,086 + RS_RS01660 0.43 -1.9 369,086 + RS_RS01660 0.43 -2.8 369,086 + RS_RS01660 0.43 +0.0 369,087 - RS_RS01660 0.43 -0.0 369,087 - RS_RS01660 0.43 +0.2 369,401 + RS_RS01660 0.64 -0.2 369,401 + RS_RS01660 0.64 +1.2 369,486 - RS_RS01660 0.70 +0.1 369,510 - RS_RS01660 0.71 -0.3 369,510 - RS_RS01660 0.71 -2.2 369,584 + RS_RS01660 0.76 -0.3 369,614 + RS_RS01660 0.78 +0.2 369,615 - RS_RS01660 0.78 +0.6 369,650 + RS_RS01660 0.81 -0.4 369,650 + RS_RS01660 0.81 -1.3 369,651 - RS_RS01660 0.81 +0.5 369,651 - RS_RS01660 0.81 +1.1 369,671 + RS_RS01660 0.82 -0.1 369,672 - RS_RS01660 0.82 -0.4 369,672 - RS_RS01660 0.82 -1.7 369,677 + RS_RS01660 0.82 +0.0 369,678 - RS_RS01660 0.82 +0.1 369,693 + RS_RS01660 0.83 -0.4 369,694 - RS_RS01660 0.84 +0.5 369,883 + -1.2 369,927 + +0.2 369,928 - -0.4 369,928 - -0.2 370,199 - +0.4 371,236 + RS_RS01665 0.75 +0.0 371,236 + RS_RS01665 0.75 +1.1 371,237 - RS_RS01665 0.75 -0.4 371,237 - RS_RS01665 0.75 -0.5 371,237 - RS_RS01665 0.75 -0.1 371,237 - RS_RS01665 0.75 +0.5 371,692 + +1.9 371,739 + +0.3 371,740 - +1.2 372,324 + +0.9 372,371 + -0.5 372,372 - -0.5 372,520 + -0.6 372,520 + +0.4 372,521 - -0.4 372,521 - -0.8
Or see this region's nucleotide sequence