Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01345 and RS_RS01350 are separated by 10 nucleotides RS_RS01350 and RS_RS01355 are separated by 10 nucleotides RS_RS01355 and RS_RS25290 are separated by 53 nucleotides RS_RS25290 and RS_RS01360 are separated by 340 nucleotides
RS_RS01345: RS_RS01345 - butyryl-CoA dehydrogenase, at 305,939 to 307,069
_RS01345
RS_RS01350: RS_RS01350 - short chain dehydrogenase, at 307,080 to 307,790
_RS01350
RS_RS01355: RS_RS01355 - acetyl-CoA C-acyltransferase, at 307,801 to 308,982
_RS01355
RS_RS25290: RS_RS25290 - hypothetical protein, at 309,036 to 309,274
_RS25290
RS_RS01360: RS_RS01360 - carbonate dehydratase, at 309,615 to 310,295
_RS01360
Position (kb) 307
308
309 Strain fitness (log2 ratio) -2
-1
0
1
2 at 306.880 kb on - strand, within RS_RS01345 at 306.880 kb on - strand, within RS_RS01345 at 306.880 kb on - strand, within RS_RS01345 at 306.880 kb on - strand, within RS_RS01345 at 307.528 kb on + strand, within RS_RS01350 at 307.529 kb on - strand, within RS_RS01350 at 307.529 kb on - strand, within RS_RS01350 at 307.544 kb on - strand, within RS_RS01350 at 307.708 kb on + strand, within RS_RS01350 at 307.708 kb on + strand, within RS_RS01350 at 307.708 kb on + strand, within RS_RS01350 at 307.709 kb on - strand, within RS_RS01350 at 308.474 kb on + strand, within RS_RS01355 at 308.474 kb on + strand, within RS_RS01355 at 308.474 kb on + strand, within RS_RS01355 at 308.561 kb on + strand, within RS_RS01355 at 308.612 kb on + strand, within RS_RS01355 at 308.612 kb on + strand, within RS_RS01355 at 308.989 kb on + strand at 308.989 kb on + strand at 308.990 kb on - strand at 308.990 kb on - strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.579 kb on + strand at 309.579 kb on + strand at 309.579 kb on + strand at 309.579 kb on + strand at 309.656 kb on - strand at 309.749 kb on - strand, within RS_RS01360 at 309.895 kb on + strand, within RS_RS01360 at 309.896 kb on - strand, within RS_RS01360 at 309.896 kb on - strand, within RS_RS01360
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 306,880 - RS_RS01345 0.83 -2.0 306,880 - RS_RS01345 0.83 +0.1 306,880 - RS_RS01345 0.83 +1.1 306,880 - RS_RS01345 0.83 -0.5 307,528 + RS_RS01350 0.63 -0.7 307,529 - RS_RS01350 0.63 +0.6 307,529 - RS_RS01350 0.63 -0.3 307,544 - RS_RS01350 0.65 -1.3 307,708 + RS_RS01350 0.88 -0.4 307,708 + RS_RS01350 0.88 +0.3 307,708 + RS_RS01350 0.88 -0.8 307,709 - RS_RS01350 0.88 -1.1 308,474 + RS_RS01355 0.57 +0.8 308,474 + RS_RS01355 0.57 +0.8 308,474 + RS_RS01355 0.57 +1.3 308,561 + RS_RS01355 0.64 +0.6 308,612 + RS_RS01355 0.69 -0.3 308,612 + RS_RS01355 0.69 -1.1 308,989 + -1.5 308,989 + -2.3 308,990 - -2.6 308,990 - -1.2 309,033 + -0.0 309,033 + -0.5 309,033 + -0.7 309,033 + -0.3 309,579 + -1.1 309,579 + -2.0 309,579 + -1.6 309,579 + +1.0 309,656 - -0.5 309,749 - RS_RS01360 0.20 +1.4 309,895 + RS_RS01360 0.41 +2.7 309,896 - RS_RS01360 0.41 +0.1 309,896 - RS_RS01360 0.41 +0.8
Or see this region's nucleotide sequence