Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01110 and RS_RS01115 are separated by 88 nucleotides RS_RS01115 and RS_RS01120 are separated by 42 nucleotides RS_RS01120 and RS_RS25270 are separated by 682 nucleotides
RS_RS01110: RS_RS01110 - RtcB family protein, at 246,150 to 247,370
_RS01110
RS_RS01115: RS_RS01115 - nucleotidyltransferase domain-containing protein, at 247,459 to 248,304
_RS01115
RS_RS01120: RS_RS01120 - RNA 3'-terminal phosphate cyclase, at 248,347 to 249,390
_RS01120
RS_RS25270: RS_RS25270 - hypothetical protein, at 250,073 to 250,351
_RS25270
Position (kb) 248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 247.369 kb on - strand at 247.916 kb on - strand, within RS_RS01115 at 247.982 kb on - strand, within RS_RS01115 at 247.987 kb on + strand, within RS_RS01115 at 247.987 kb on + strand, within RS_RS01115 at 247.987 kb on + strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 247.988 kb on - strand, within RS_RS01115 at 248.149 kb on + strand, within RS_RS01115 at 248.149 kb on + strand, within RS_RS01115 at 248.149 kb on + strand, within RS_RS01115 at 248.150 kb on - strand, within RS_RS01115 at 248.266 kb on + strand at 248.267 kb on - strand at 248.267 kb on - strand at 248.337 kb on + strand at 248.337 kb on + strand at 248.337 kb on + strand at 248.360 kb on + strand at 248.361 kb on - strand at 248.361 kb on - strand at 248.561 kb on + strand, within RS_RS01120 at 248.627 kb on - strand, within RS_RS01120 at 248.842 kb on + strand, within RS_RS01120 at 249.653 kb on + strand at 249.654 kb on - strand at 249.654 kb on - strand at 249.656 kb on - strand at 249.874 kb on - strand at 249.874 kb on - strand at 249.953 kb on + strand at 249.978 kb on + strand at 250.032 kb on + strand at 250.032 kb on + strand at 250.032 kb on + strand at 250.033 kb on - strand at 250.033 kb on - strand at 250.114 kb on + strand, within RS_RS25270 at 250.115 kb on - strand, within RS_RS25270 at 250.119 kb on + strand, within RS_RS25270 at 250.166 kb on - strand, within RS_RS25270 at 250.166 kb on - strand, within RS_RS25270 at 250.240 kb on + strand, within RS_RS25270 at 250.240 kb on + strand, within RS_RS25270 at 250.240 kb on + strand, within RS_RS25270 at 250.241 kb on - strand, within RS_RS25270 at 250.241 kb on - strand, within RS_RS25270
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems remove 247,369 - +0.6 247,916 - RS_RS01115 0.54 +0.4 247,982 - RS_RS01115 0.62 +0.6 247,987 + RS_RS01115 0.62 +0.4 247,987 + RS_RS01115 0.62 +0.9 247,987 + RS_RS01115 0.62 +1.7 247,988 - RS_RS01115 0.63 -0.4 247,988 - RS_RS01115 0.63 +0.5 247,988 - RS_RS01115 0.63 -0.6 247,988 - RS_RS01115 0.63 -0.0 247,988 - RS_RS01115 0.63 -0.9 247,988 - RS_RS01115 0.63 +2.2 247,988 - RS_RS01115 0.63 -0.7 248,149 + RS_RS01115 0.82 +1.5 248,149 + RS_RS01115 0.82 -0.7 248,149 + RS_RS01115 0.82 +1.7 248,150 - RS_RS01115 0.82 +1.3 248,266 + -0.2 248,267 - -1.0 248,267 - +0.4 248,337 + -0.2 248,337 + -1.4 248,337 + +0.4 248,360 + -0.9 248,361 - -0.6 248,361 - -0.6 248,561 + RS_RS01120 0.20 +0.4 248,627 - RS_RS01120 0.27 -1.1 248,842 + RS_RS01120 0.47 -1.1 249,653 + +1.1 249,654 - +0.1 249,654 - +1.9 249,656 - -1.3 249,874 - +0.0 249,874 - -0.2 249,953 + -0.2 249,978 + -3.3 250,032 + -1.8 250,032 + -0.3 250,032 + +0.3 250,033 - +0.2 250,033 - -1.8 250,114 + RS_RS25270 0.15 +0.1 250,115 - RS_RS25270 0.15 +0.3 250,119 + RS_RS25270 0.16 +0.4 250,166 - RS_RS25270 0.33 +0.5 250,166 - RS_RS25270 0.33 -0.2 250,240 + RS_RS25270 0.60 +0.7 250,240 + RS_RS25270 0.60 -0.7 250,240 + RS_RS25270 0.60 -2.8 250,241 - RS_RS25270 0.60 -0.7 250,241 - RS_RS25270 0.60 +2.9
Or see this region's nucleotide sequence