Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00515

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00510 and RS_RS00515 overlap by 3 nucleotidesRS_RS00515 and RS_RS25235 are separated by 267 nucleotides RS_RS00510: RS_RS00510 - IS630 family transposase ISRso5, at 117,992 to 119,083 _RS00510 RS_RS00515: RS_RS00515 - hemolysin, at 119,081 to 121,909 _RS00515 RS_RS25235: RS_RS25235 - hypothetical protein, at 122,177 to 122,956 _RS25235 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 119.228 kb on - strandat 119.275 kb on + strandat 119.275 kb on + strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.432 kb on + strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.449 kb on - strand, within RS_RS00515at 119.449 kb on - strand, within RS_RS00515at 119.511 kb on + strand, within RS_RS00515at 119.554 kb on + strand, within RS_RS00515at 119.555 kb on - strand, within RS_RS00515at 119.588 kb on - strand, within RS_RS00515at 119.588 kb on - strand, within RS_RS00515at 119.719 kb on + strand, within RS_RS00515at 119.719 kb on + strand, within RS_RS00515at 119.719 kb on + strand, within RS_RS00515at 119.720 kb on - strand, within RS_RS00515at 119.720 kb on - strand, within RS_RS00515at 119.851 kb on + strand, within RS_RS00515at 120.021 kb on + strand, within RS_RS00515at 120.021 kb on + strand, within RS_RS00515at 120.022 kb on - strand, within RS_RS00515at 120.022 kb on - strand, within RS_RS00515at 120.144 kb on + strand, within RS_RS00515at 120.144 kb on + strand, within RS_RS00515at 120.145 kb on - strand, within RS_RS00515at 120.145 kb on - strand, within RS_RS00515at 120.195 kb on + strand, within RS_RS00515at 120.207 kb on - strand, within RS_RS00515at 120.207 kb on - strand, within RS_RS00515at 120.207 kb on - strand, within RS_RS00515at 120.218 kb on + strand, within RS_RS00515at 120.218 kb on + strand, within RS_RS00515at 120.255 kb on + strand, within RS_RS00515at 120.255 kb on + strand, within RS_RS00515at 120.255 kb on + strand, within RS_RS00515at 120.255 kb on + strand, within RS_RS00515at 120.255 kb on + strand, within RS_RS00515at 120.256 kb on - strand, within RS_RS00515at 120.256 kb on - strand, within RS_RS00515at 120.256 kb on - strand, within RS_RS00515at 120.291 kb on + strand, within RS_RS00515at 120.315 kb on + strand, within RS_RS00515at 120.315 kb on + strand, within RS_RS00515at 120.315 kb on + strand, within RS_RS00515at 120.315 kb on + strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.316 kb on - strand, within RS_RS00515at 120.356 kb on + strand, within RS_RS00515at 120.357 kb on - strand, within RS_RS00515at 120.357 kb on - strand, within RS_RS00515at 120.409 kb on + strand, within RS_RS00515at 120.410 kb on - strand, within RS_RS00515at 120.411 kb on + strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.412 kb on - strand, within RS_RS00515at 120.576 kb on - strand, within RS_RS00515at 120.609 kb on + strand, within RS_RS00515at 120.610 kb on - strand, within RS_RS00515at 120.633 kb on + strand, within RS_RS00515at 120.633 kb on + strand, within RS_RS00515at 120.634 kb on - strand, within RS_RS00515at 120.639 kb on + strand, within RS_RS00515at 120.639 kb on + strand, within RS_RS00515at 120.639 kb on + strand, within RS_RS00515at 120.639 kb on + strand, within RS_RS00515at 120.640 kb on - strand, within RS_RS00515at 120.660 kb on + strand, within RS_RS00515at 120.661 kb on - strand, within RS_RS00515at 120.661 kb on - strand, within RS_RS00515at 120.765 kb on + strand, within RS_RS00515at 120.765 kb on + strand, within RS_RS00515at 120.765 kb on + strand, within RS_RS00515at 120.901 kb on - strand, within RS_RS00515at 120.901 kb on - strand, within RS_RS00515at 120.901 kb on - strand, within RS_RS00515at 120.901 kb on - strand, within RS_RS00515at 120.901 kb on - strand, within RS_RS00515at 121.623 kb on + strand, within RS_RS00515at 121.624 kb on - strand, within RS_RS00515at 121.624 kb on - strand, within RS_RS00515at 121.749 kb on - strandat 121.896 kb on + strandat 121.897 kb on - strandat 121.995 kb on + strandat 122.127 kb on - strandat 122.135 kb on + strandat 122.135 kb on + strandat 122.260 kb on + strand, within RS_RS25235at 122.261 kb on - strand, within RS_RS25235at 122.332 kb on + strand, within RS_RS25235at 122.337 kb on - strand, within RS_RS25235at 122.492 kb on + strand, within RS_RS25235at 122.519 kb on + strand, within RS_RS25235at 122.675 kb on + strand, within RS_RS25235at 122.746 kb on + strand, within RS_RS25235at 122.747 kb on - strand, within RS_RS25235at 122.780 kb on + strand, within RS_RS25235at 122.855 kb on + strand, within RS_RS25235at 122.855 kb on + strand, within RS_RS25235at 122.856 kb on - strand, within RS_RS25235

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
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119,228 - +0.9
119,275 + +0.1
119,275 + -0.3
119,276 - -0.4
119,276 - -1.5
119,276 - -0.1
119,276 - -0.9
119,276 - -0.5
119,276 - +0.2
119,276 - +0.7
119,276 - +0.0
119,432 + RS_RS00515 0.12 +0.4
119,446 - RS_RS00515 0.13 -0.1
119,446 - RS_RS00515 0.13 +1.0
119,446 - RS_RS00515 0.13 -0.7
119,446 - RS_RS00515 0.13 +0.5
119,449 - RS_RS00515 0.13 +0.3
119,449 - RS_RS00515 0.13 +0.5
119,511 + RS_RS00515 0.15 -1.1
119,554 + RS_RS00515 0.17 +0.2
119,555 - RS_RS00515 0.17 -0.3
119,588 - RS_RS00515 0.18 -1.0
119,588 - RS_RS00515 0.18 +1.5
119,719 + RS_RS00515 0.23 -0.1
119,719 + RS_RS00515 0.23 -0.7
119,719 + RS_RS00515 0.23 +0.8
119,720 - RS_RS00515 0.23 -0.0
119,720 - RS_RS00515 0.23 -1.2
119,851 + RS_RS00515 0.27 -0.4
120,021 + RS_RS00515 0.33 +0.7
120,021 + RS_RS00515 0.33 -3.1
120,022 - RS_RS00515 0.33 -0.2
120,022 - RS_RS00515 0.33 -1.0
120,144 + RS_RS00515 0.38 -1.3
120,144 + RS_RS00515 0.38 -0.2
120,145 - RS_RS00515 0.38 -1.1
120,145 - RS_RS00515 0.38 -0.1
120,195 + RS_RS00515 0.39 -0.3
120,207 - RS_RS00515 0.40 +1.3
120,207 - RS_RS00515 0.40 -1.0
120,207 - RS_RS00515 0.40 -0.5
120,218 + RS_RS00515 0.40 -0.1
120,218 + RS_RS00515 0.40 +0.4
120,255 + RS_RS00515 0.41 +1.4
120,255 + RS_RS00515 0.41 +0.4
120,255 + RS_RS00515 0.41 +0.2
120,255 + RS_RS00515 0.41 -1.7
120,255 + RS_RS00515 0.41 -0.2
120,256 - RS_RS00515 0.42 -1.2
120,256 - RS_RS00515 0.42 -1.1
120,256 - RS_RS00515 0.42 -0.7
120,291 + RS_RS00515 0.43 -0.0
120,315 + RS_RS00515 0.44 +0.5
120,315 + RS_RS00515 0.44 -0.7
120,315 + RS_RS00515 0.44 -0.4
120,315 + RS_RS00515 0.44 +0.6
120,316 - RS_RS00515 0.44 -0.3
120,316 - RS_RS00515 0.44 +2.0
120,316 - RS_RS00515 0.44 -0.7
120,316 - RS_RS00515 0.44 -0.9
120,316 - RS_RS00515 0.44 +0.0
120,316 - RS_RS00515 0.44 +0.0
120,356 + RS_RS00515 0.45 -0.6
120,357 - RS_RS00515 0.45 +0.5
120,357 - RS_RS00515 0.45 +0.6
120,409 + RS_RS00515 0.47 -0.0
120,410 - RS_RS00515 0.47 +0.2
120,411 + RS_RS00515 0.47 -0.1
120,412 - RS_RS00515 0.47 -0.3
120,412 - RS_RS00515 0.47 -0.1
120,412 - RS_RS00515 0.47 -0.3
120,412 - RS_RS00515 0.47 +0.2
120,412 - RS_RS00515 0.47 -0.2
120,412 - RS_RS00515 0.47 -0.1
120,412 - RS_RS00515 0.47 +0.3
120,576 - RS_RS00515 0.53 -0.1
120,609 + RS_RS00515 0.54 +0.1
120,610 - RS_RS00515 0.54 +0.2
120,633 + RS_RS00515 0.55 +0.1
120,633 + RS_RS00515 0.55 -1.3
120,634 - RS_RS00515 0.55 -1.5
120,639 + RS_RS00515 0.55 +0.2
120,639 + RS_RS00515 0.55 -0.6
120,639 + RS_RS00515 0.55 +0.2
120,639 + RS_RS00515 0.55 -0.7
120,640 - RS_RS00515 0.55 -0.8
120,660 + RS_RS00515 0.56 -0.8
120,661 - RS_RS00515 0.56 +2.1
120,661 - RS_RS00515 0.56 +1.4
120,765 + RS_RS00515 0.60 -0.1
120,765 + RS_RS00515 0.60 -0.3
120,765 + RS_RS00515 0.60 +1.2
120,901 - RS_RS00515 0.64 -1.3
120,901 - RS_RS00515 0.64 +0.0
120,901 - RS_RS00515 0.64 -2.3
120,901 - RS_RS00515 0.64 -0.0
120,901 - RS_RS00515 0.64 -0.7
121,623 + RS_RS00515 0.90 -0.1
121,624 - RS_RS00515 0.90 -0.5
121,624 - RS_RS00515 0.90 -1.1
121,749 - -0.0
121,896 + +0.2
121,897 - -0.1
121,995 + -1.4
122,127 - +0.0
122,135 + +0.3
122,135 + +0.2
122,260 + RS_RS25235 0.11 -1.5
122,261 - RS_RS25235 0.11 +1.8
122,332 + RS_RS25235 0.20 -2.7
122,337 - RS_RS25235 0.21 +3.8
122,492 + RS_RS25235 0.40 -0.3
122,519 + RS_RS25235 0.44 -0.1
122,675 + RS_RS25235 0.64 -0.4
122,746 + RS_RS25235 0.73 +0.0
122,747 - RS_RS25235 0.73 +2.8
122,780 + RS_RS25235 0.77 +0.1
122,855 + RS_RS25235 0.87 -1.7
122,855 + RS_RS25235 0.87 -1.0
122,856 - RS_RS25235 0.87 +1.8

Or see this region's nucleotide sequence