Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05603 and H281DRAFT_05604 are separated by 184 nucleotides H281DRAFT_05604 and H281DRAFT_05605 are separated by 11 nucleotides H281DRAFT_05605 and H281DRAFT_05606 are separated by 84 nucleotides
H281DRAFT_05603: H281DRAFT_05603 - cytochrome c-type biogenesis protein CcsB, at 23,004 to 24,215
_05603
H281DRAFT_05604: H281DRAFT_05604 - sulfoxide reductase catalytic subunit YedY, at 24,400 to 25,395
_05604
H281DRAFT_05605: H281DRAFT_05605 - sulfoxide reductase heme-binding subunit YedZ, at 25,407 to 26,108
_05605
H281DRAFT_05606: H281DRAFT_05606 - diaminopimelate decarboxylase, at 26,193 to 27,455
_05606
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 24.214 kb on - strand at 24.287 kb on + strand at 24.287 kb on + strand at 24.320 kb on + strand at 24.320 kb on + strand at 24.664 kb on + strand, within H281DRAFT_05604 at 24.664 kb on + strand, within H281DRAFT_05604 at 24.664 kb on + strand, within H281DRAFT_05604 at 24.664 kb on + strand, within H281DRAFT_05604 at 24.665 kb on - strand, within H281DRAFT_05604 at 24.665 kb on - strand, within H281DRAFT_05604 at 24.673 kb on + strand, within H281DRAFT_05604 at 24.674 kb on - strand, within H281DRAFT_05604 at 24.674 kb on - strand, within H281DRAFT_05604 at 24.676 kb on + strand, within H281DRAFT_05604 at 24.712 kb on - strand, within H281DRAFT_05604 at 24.782 kb on - strand at 24.829 kb on + strand, within H281DRAFT_05604 at 24.830 kb on - strand, within H281DRAFT_05604 at 24.931 kb on + strand, within H281DRAFT_05604 at 24.946 kb on - strand, within H281DRAFT_05604 at 24.946 kb on - strand, within H281DRAFT_05604 at 25.003 kb on + strand, within H281DRAFT_05604 at 25.020 kb on + strand, within H281DRAFT_05604 at 25.020 kb on + strand, within H281DRAFT_05604 at 25.064 kb on + strand, within H281DRAFT_05604 at 25.064 kb on + strand, within H281DRAFT_05604 at 25.064 kb on + strand, within H281DRAFT_05604 at 25.066 kb on + strand, within H281DRAFT_05604 at 25.201 kb on + strand, within H281DRAFT_05604 at 25.201 kb on + strand, within H281DRAFT_05604 at 25.202 kb on - strand, within H281DRAFT_05604 at 25.202 kb on - strand, within H281DRAFT_05604 at 25.202 kb on - strand, within H281DRAFT_05604 at 25.202 kb on - strand, within H281DRAFT_05604 at 25.202 kb on - strand, within H281DRAFT_05604 at 25.226 kb on - strand, within H281DRAFT_05604 at 25.472 kb on + strand at 25.473 kb on - strand at 25.737 kb on + strand, within H281DRAFT_05605 at 25.737 kb on + strand, within H281DRAFT_05605 at 25.737 kb on + strand, within H281DRAFT_05605 at 25.738 kb on - strand, within H281DRAFT_05605 at 25.738 kb on - strand, within H281DRAFT_05605 at 25.738 kb on - strand, within H281DRAFT_05605 at 25.773 kb on + strand, within H281DRAFT_05605 at 25.773 kb on + strand, within H281DRAFT_05605 at 25.773 kb on + strand, within H281DRAFT_05605 at 25.773 kb on + strand, within H281DRAFT_05605 at 25.774 kb on - strand, within H281DRAFT_05605 at 25.774 kb on - strand, within H281DRAFT_05605 at 25.841 kb on + strand, within H281DRAFT_05605 at 25.950 kb on + strand, within H281DRAFT_05605 at 25.950 kb on + strand, within H281DRAFT_05605 at 25.950 kb on + strand at 25.951 kb on - strand, within H281DRAFT_05605 at 25.951 kb on - strand, within H281DRAFT_05605 at 26.096 kb on - strand at 26.096 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 24,214 - +0.1 24,287 + +0.6 24,287 + +0.3 24,320 + +0.1 24,320 + +0.1 24,664 + H281DRAFT_05604 0.27 -0.9 24,664 + H281DRAFT_05604 0.27 -1.8 24,664 + H281DRAFT_05604 0.27 -1.1 24,664 + H281DRAFT_05604 0.27 -0.0 24,665 - H281DRAFT_05604 0.27 +0.1 24,665 - H281DRAFT_05604 0.27 -1.3 24,673 + H281DRAFT_05604 0.27 +0.7 24,674 - H281DRAFT_05604 0.28 +0.6 24,674 - H281DRAFT_05604 0.28 -3.0 24,676 + H281DRAFT_05604 0.28 +0.5 24,712 - H281DRAFT_05604 0.31 -0.2 24,782 - -0.4 24,829 + H281DRAFT_05604 0.43 -0.2 24,830 - H281DRAFT_05604 0.43 +1.1 24,931 + H281DRAFT_05604 0.53 +0.5 24,946 - H281DRAFT_05604 0.55 +1.0 24,946 - H281DRAFT_05604 0.55 +0.3 25,003 + H281DRAFT_05604 0.61 -1.1 25,020 + H281DRAFT_05604 0.62 -0.6 25,020 + H281DRAFT_05604 0.62 -0.9 25,064 + H281DRAFT_05604 0.67 -1.1 25,064 + H281DRAFT_05604 0.67 +0.7 25,064 + H281DRAFT_05604 0.67 -0.6 25,066 + H281DRAFT_05604 0.67 -2.8 25,201 + H281DRAFT_05604 0.80 -0.3 25,201 + H281DRAFT_05604 0.80 -0.4 25,202 - H281DRAFT_05604 0.81 -0.3 25,202 - H281DRAFT_05604 0.81 +0.3 25,202 - H281DRAFT_05604 0.81 -1.1 25,202 - H281DRAFT_05604 0.81 -0.1 25,202 - H281DRAFT_05604 0.81 +3.1 25,226 - H281DRAFT_05604 0.83 -0.4 25,472 + +0.7 25,473 - -0.6 25,737 + H281DRAFT_05605 0.47 +0.2 25,737 + H281DRAFT_05605 0.47 -0.3 25,737 + H281DRAFT_05605 0.47 +0.1 25,738 - H281DRAFT_05605 0.47 -0.6 25,738 - H281DRAFT_05605 0.47 -0.6 25,738 - H281DRAFT_05605 0.47 -0.0 25,773 + H281DRAFT_05605 0.52 +0.5 25,773 + H281DRAFT_05605 0.52 -0.0 25,773 + H281DRAFT_05605 0.52 +0.5 25,773 + H281DRAFT_05605 0.52 +1.5 25,774 - H281DRAFT_05605 0.52 -1.8 25,774 - H281DRAFT_05605 0.52 -0.2 25,841 + H281DRAFT_05605 0.62 +1.2 25,950 + H281DRAFT_05605 0.77 -1.0 25,950 + H281DRAFT_05605 0.77 -0.1 25,950 + -0.6 25,951 - H281DRAFT_05605 0.77 -0.1 25,951 - H281DRAFT_05605 0.77 -2.1 26,096 - -1.8 26,096 - -2.9
Or see this region's nucleotide sequence