Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05430

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05429 and H281DRAFT_05430 are separated by 25 nucleotidesH281DRAFT_05430 and H281DRAFT_05431 overlap by 4 nucleotides H281DRAFT_05429: H281DRAFT_05429 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit, at 4,703 to 6,001 _05429 H281DRAFT_05430: H281DRAFT_05430 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 6,027 to 6,734 _05430 H281DRAFT_05431: H281DRAFT_05431 - amino acid/amide ABC transporter membrane protein 2, HAAT family /amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 6,731 to 8,593 _05431 Position (kb) 6 7Strain fitness (log2 ratio) -2 -1 0 1at 5.100 kb on + strand, within H281DRAFT_05429at 5.112 kb on - strand, within H281DRAFT_05429at 5.177 kb on - strand, within H281DRAFT_05429at 5.179 kb on + strand, within H281DRAFT_05429at 5.179 kb on + strand, within H281DRAFT_05429at 5.180 kb on - strand, within H281DRAFT_05429at 5.180 kb on - strand, within H281DRAFT_05429at 5.218 kb on + strand, within H281DRAFT_05429at 5.219 kb on - strand, within H281DRAFT_05429at 5.358 kb on + strand, within H281DRAFT_05429at 5.358 kb on + strand, within H281DRAFT_05429at 5.358 kb on + strand, within H281DRAFT_05429at 5.396 kb on - strand, within H281DRAFT_05429at 5.627 kb on - strand, within H281DRAFT_05429at 5.629 kb on - strand, within H281DRAFT_05429at 5.719 kb on - strand, within H281DRAFT_05429at 5.982 kb on + strandat 6.001 kb on + strandat 6.069 kb on - strandat 6.340 kb on + strand, within H281DRAFT_05430at 6.340 kb on + strand, within H281DRAFT_05430at 6.432 kb on + strand, within H281DRAFT_05430at 6.433 kb on - strand, within H281DRAFT_05430at 6.691 kb on + strandat 6.691 kb on + strandat 6.692 kb on - strandat 6.793 kb on - strandat 6.802 kb on + strandat 7.217 kb on + strand, within H281DRAFT_05431at 7.217 kb on + strand, within H281DRAFT_05431at 7.217 kb on + strand, within H281DRAFT_05431at 7.409 kb on + strand, within H281DRAFT_05431at 7.409 kb on + strand, within H281DRAFT_05431at 7.526 kb on + strand, within H281DRAFT_05431at 7.579 kb on + strand, within H281DRAFT_05431at 7.646 kb on + strand, within H281DRAFT_05431at 7.646 kb on + strand, within H281DRAFT_05431

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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5,100 + H281DRAFT_05429 0.31 +0.7
5,112 - H281DRAFT_05429 0.31 -0.5
5,177 - H281DRAFT_05429 0.36 +0.0
5,179 + H281DRAFT_05429 0.37 +0.3
5,179 + H281DRAFT_05429 0.37 +0.2
5,180 - H281DRAFT_05429 0.37 +0.1
5,180 - H281DRAFT_05429 0.37 -0.7
5,218 + H281DRAFT_05429 0.40 -2.3
5,219 - H281DRAFT_05429 0.40 +0.8
5,358 + H281DRAFT_05429 0.50 -0.9
5,358 + H281DRAFT_05429 0.50 -0.7
5,358 + H281DRAFT_05429 0.50 +1.7
5,396 - H281DRAFT_05429 0.53 +0.5
5,627 - H281DRAFT_05429 0.71 +0.0
5,629 - H281DRAFT_05429 0.71 +0.1
5,719 - H281DRAFT_05429 0.78 -0.5
5,982 + -0.1
6,001 + -0.3
6,069 - +0.8
6,340 + H281DRAFT_05430 0.44 -0.8
6,340 + H281DRAFT_05430 0.44 -0.4
6,432 + H281DRAFT_05430 0.57 +0.5
6,433 - H281DRAFT_05430 0.57 -1.1
6,691 + +0.1
6,691 + +0.6
6,692 - +0.6
6,793 - +0.3
6,802 + -0.7
7,217 + H281DRAFT_05431 0.26 +0.6
7,217 + H281DRAFT_05431 0.26 +0.1
7,217 + H281DRAFT_05431 0.26 +0.2
7,409 + H281DRAFT_05431 0.36 +0.2
7,409 + H281DRAFT_05431 0.36 -0.0
7,526 + H281DRAFT_05431 0.43 -0.6
7,579 + H281DRAFT_05431 0.46 +0.0
7,646 + H281DRAFT_05431 0.49 +1.2
7,646 + H281DRAFT_05431 0.49 +0.3

Or see this region's nucleotide sequence