Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05361

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05360 and H281DRAFT_05361 are separated by 121 nucleotidesH281DRAFT_05361 and H281DRAFT_05362 are separated by 333 nucleotides H281DRAFT_05360: H281DRAFT_05360 - type VI secretion system protein ImpJ, at 113,176 to 114,522 _05360 H281DRAFT_05361: H281DRAFT_05361 - type VI secretion system protein VasD, at 114,644 to 115,309 _05361 H281DRAFT_05362: H281DRAFT_05362 - Tetratricopeptide repeat-containing protein, at 115,643 to 116,329 _05362 Position (kb) 114 115 116Strain fitness (log2 ratio) -1 0 1 2at 113.646 kb on - strand, within H281DRAFT_05360at 113.669 kb on + strand, within H281DRAFT_05360at 113.669 kb on + strand, within H281DRAFT_05360at 113.670 kb on - strand, within H281DRAFT_05360at 113.670 kb on - strand, within H281DRAFT_05360at 113.753 kb on + strand, within H281DRAFT_05360at 113.754 kb on - strand, within H281DRAFT_05360at 113.868 kb on - strand, within H281DRAFT_05360at 113.870 kb on - strand, within H281DRAFT_05360at 114.143 kb on + strand, within H281DRAFT_05360at 114.143 kb on + strand, within H281DRAFT_05360at 114.143 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360at 114.237 kb on + strand, within H281DRAFT_05360at 114.237 kb on + strand, within H281DRAFT_05360at 114.238 kb on - strand, within H281DRAFT_05360at 114.300 kb on - strand, within H281DRAFT_05360at 114.388 kb on + strandat 114.388 kb on + strandat 114.389 kb on - strandat 114.399 kb on + strandat 114.399 kb on + strandat 114.399 kb on + strandat 114.400 kb on - strandat 114.401 kb on + strandat 114.402 kb on - strandat 114.411 kb on + strandat 114.534 kb on + strandat 114.534 kb on + strandat 114.534 kb on + strandat 114.534 kb on + strandat 114.535 kb on - strandat 114.535 kb on - strandat 114.535 kb on - strandat 114.535 kb on - strandat 114.565 kb on + strandat 114.565 kb on + strandat 114.566 kb on - strandat 114.566 kb on - strandat 114.566 kb on - strandat 114.566 kb on - strandat 114.571 kb on + strandat 114.591 kb on - strandat 114.645 kb on + strandat 114.646 kb on - strandat 114.646 kb on - strandat 114.655 kb on + strandat 114.655 kb on + strandat 114.655 kb on + strandat 114.656 kb on - strandat 114.656 kb on - strandat 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.743 kb on - strand, within H281DRAFT_05361at 114.743 kb on - strand, within H281DRAFT_05361at 114.758 kb on + strand, within H281DRAFT_05361at 114.864 kb on - strand, within H281DRAFT_05361at 114.882 kb on + strand, within H281DRAFT_05361at 114.882 kb on + strandat 114.882 kb on + strand, within H281DRAFT_05361at 114.939 kb on - strand, within H281DRAFT_05361at 114.939 kb on - strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.077 kb on + strand, within H281DRAFT_05361at 115.079 kb on + strand, within H281DRAFT_05361at 115.079 kb on + strand, within H281DRAFT_05361at 115.080 kb on - strand, within H281DRAFT_05361at 115.080 kb on - strand, within H281DRAFT_05361at 115.080 kb on - strand, within H281DRAFT_05361at 115.239 kb on - strand, within H281DRAFT_05361at 115.272 kb on + strandat 115.272 kb on + strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.303 kb on + strandat 115.304 kb on - strandat 115.304 kb on - strandat 115.304 kb on - strandat 115.322 kb on + strandat 115.346 kb on - strandat 115.346 kb on - strandat 115.366 kb on - strandat 115.392 kb on - strandat 115.403 kb on + strandat 115.403 kb on + strandat 115.403 kb on + strandat 115.404 kb on - strandat 115.404 kb on - strandat 115.404 kb on - strandat 115.509 kb on - strandat 115.565 kb on + strandat 115.566 kb on - strandat 115.566 kb on - strandat 115.568 kb on + strandat 115.568 kb on + strandat 115.570 kb on + strandat 115.659 kb on + strandat 115.660 kb on - strandat 115.660 kb on - strandat 115.662 kb on + strandat 115.663 kb on - strandat 115.669 kb on - strandat 115.669 kb on - strandat 115.677 kb on + strandat 115.678 kb on - strandat 115.751 kb on - strand, within H281DRAFT_05362at 115.751 kb on - strand, within H281DRAFT_05362at 115.754 kb on - strand, within H281DRAFT_05362at 115.774 kb on + strand, within H281DRAFT_05362at 115.774 kb on + strand, within H281DRAFT_05362at 115.775 kb on - strand, within H281DRAFT_05362at 115.775 kb on - strand, within H281DRAFT_05362at 115.779 kb on + strand, within H281DRAFT_05362at 115.779 kb on + strand, within H281DRAFT_05362at 115.817 kb on + strand, within H281DRAFT_05362at 115.818 kb on - strand, within H281DRAFT_05362at 115.818 kb on - strandat 115.898 kb on + strand, within H281DRAFT_05362at 115.898 kb on + strand, within H281DRAFT_05362at 115.899 kb on - strand, within H281DRAFT_05362at 115.969 kb on - strand, within H281DRAFT_05362at 115.969 kb on - strand, within H281DRAFT_05362at 116.184 kb on + strand, within H281DRAFT_05362at 116.185 kb on - strand, within H281DRAFT_05362

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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113,646 - H281DRAFT_05360 0.35 +0.2
113,669 + H281DRAFT_05360 0.37 +0.1
113,669 + H281DRAFT_05360 0.37 +0.1
113,670 - H281DRAFT_05360 0.37 +0.4
113,670 - H281DRAFT_05360 0.37 +0.6
113,753 + H281DRAFT_05360 0.43 -0.5
113,754 - H281DRAFT_05360 0.43 +0.9
113,868 - H281DRAFT_05360 0.51 -0.2
113,870 - H281DRAFT_05360 0.52 +0.8
114,143 + H281DRAFT_05360 0.72 +0.4
114,143 + H281DRAFT_05360 0.72 +0.3
114,143 + H281DRAFT_05360 0.72 +0.1
114,179 + H281DRAFT_05360 0.74 +0.8
114,179 + H281DRAFT_05360 0.74 +0.6
114,179 + H281DRAFT_05360 0.74 -0.1
114,179 + H281DRAFT_05360 0.74 +0.7
114,237 + H281DRAFT_05360 0.79 +2.1
114,237 + H281DRAFT_05360 0.79 -0.2
114,238 - H281DRAFT_05360 0.79 -0.2
114,300 - H281DRAFT_05360 0.83 -0.5
114,388 + +0.2
114,388 + +0.3
114,389 - +0.7
114,399 + +0.5
114,399 + -0.3
114,399 + +0.4
114,400 - +0.3
114,401 + +0.8
114,402 - -0.7
114,411 + -0.7
114,534 + -0.5
114,534 + +0.7
114,534 + +0.3
114,534 + -0.3
114,535 - +0.5
114,535 - -0.8
114,535 - +0.1
114,535 - +0.5
114,565 + +0.2
114,565 + +0.4
114,566 - +0.6
114,566 - -0.3
114,566 - +0.2
114,566 - +0.1
114,571 + +1.1
114,591 - +0.5
114,645 + -0.4
114,646 - -0.9
114,646 - -0.3
114,655 + +0.2
114,655 + +0.4
114,655 + -0.3
114,656 - +0.5
114,656 - +0.6
114,742 + H281DRAFT_05361 0.15 -0.4
114,742 + H281DRAFT_05361 0.15 -0.0
114,742 + H281DRAFT_05361 0.15 -0.1
114,742 + H281DRAFT_05361 0.15 -0.4
114,742 + H281DRAFT_05361 0.15 -1.3
114,743 - H281DRAFT_05361 0.15 +0.2
114,743 - H281DRAFT_05361 0.15 +0.1
114,758 + H281DRAFT_05361 0.17 -0.9
114,864 - H281DRAFT_05361 0.33 -0.1
114,882 + H281DRAFT_05361 0.36 +1.3
114,882 + +2.5
114,882 + H281DRAFT_05361 0.36 +0.4
114,939 - H281DRAFT_05361 0.44 +0.1
114,939 - H281DRAFT_05361 0.44 +2.1
115,014 + H281DRAFT_05361 0.56 +0.4
115,014 + H281DRAFT_05361 0.56 -0.6
115,014 + H281DRAFT_05361 0.56 +0.6
115,014 + H281DRAFT_05361 0.56 -0.2
115,077 + H281DRAFT_05361 0.65 +0.2
115,079 + H281DRAFT_05361 0.65 -0.1
115,079 + H281DRAFT_05361 0.65 +0.3
115,080 - H281DRAFT_05361 0.65 +0.6
115,080 - H281DRAFT_05361 0.65 +0.6
115,080 - H281DRAFT_05361 0.65 +0.0
115,239 - H281DRAFT_05361 0.89 -0.3
115,272 + +1.1
115,272 + +0.8
115,273 - +0.2
115,273 - +0.7
115,273 - +0.3
115,273 - +0.8
115,273 - -0.3
115,303 + -0.1
115,304 - +0.3
115,304 - +0.3
115,304 - +0.1
115,322 + +1.5
115,346 - +0.3
115,346 - -1.0
115,366 - +0.7
115,392 - -0.4
115,403 + +0.1
115,403 + +0.7
115,403 + -0.5
115,404 - -0.1
115,404 - +0.1
115,404 - +0.7
115,509 - +0.6
115,565 + +0.6
115,566 - +0.6
115,566 - +1.1
115,568 + +0.6
115,568 + +0.7
115,570 + +0.0
115,659 + -1.2
115,660 - +0.6
115,660 - +0.0
115,662 + -0.1
115,663 - +0.3
115,669 - +0.1
115,669 - +0.1
115,677 + -0.1
115,678 - +0.2
115,751 - H281DRAFT_05362 0.16 -0.2
115,751 - H281DRAFT_05362 0.16 +0.3
115,754 - H281DRAFT_05362 0.16 -1.2
115,774 + H281DRAFT_05362 0.19 -0.6
115,774 + H281DRAFT_05362 0.19 +0.4
115,775 - H281DRAFT_05362 0.19 +0.2
115,775 - H281DRAFT_05362 0.19 +0.1
115,779 + H281DRAFT_05362 0.20 +0.6
115,779 + H281DRAFT_05362 0.20 +0.1
115,817 + H281DRAFT_05362 0.25 -0.3
115,818 - H281DRAFT_05362 0.25 -1.3
115,818 - +2.1
115,898 + H281DRAFT_05362 0.37 -0.0
115,898 + H281DRAFT_05362 0.37 -0.1
115,899 - H281DRAFT_05362 0.37 -0.2
115,969 - H281DRAFT_05362 0.47 -0.2
115,969 - H281DRAFT_05362 0.47 -0.4
116,184 + H281DRAFT_05362 0.79 -0.5
116,185 - H281DRAFT_05362 0.79 +0.7

Or see this region's nucleotide sequence