Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05348

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05347 and H281DRAFT_05348 are separated by 13 nucleotidesH281DRAFT_05348 and H281DRAFT_05349 are separated by 220 nucleotidesH281DRAFT_05349 and H281DRAFT_05350 overlap by 31 nucleotides H281DRAFT_05347: H281DRAFT_05347 - Nuclease-related domain-containing protein, at 98,602 to 100,296 _05347 H281DRAFT_05348: H281DRAFT_05348 - Hypoxanthine phosphoribosyltransferase, at 100,310 to 101,263 _05348 H281DRAFT_05349: H281DRAFT_05349 - hypothetical protein, at 101,484 to 102,026 _05349 H281DRAFT_05350: H281DRAFT_05350 - Signal transduction histidine kinase, at 101,996 to 103,846 _05350 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1at 99.353 kb on + strand, within H281DRAFT_05347at 99.355 kb on + strand, within H281DRAFT_05347at 99.355 kb on + strand, within H281DRAFT_05347at 99.355 kb on + strand, within H281DRAFT_05347at 99.355 kb on + strand, within H281DRAFT_05347at 99.356 kb on - strand, within H281DRAFT_05347at 99.356 kb on - strand, within H281DRAFT_05347at 99.388 kb on - strand, within H281DRAFT_05347at 99.427 kb on + strand, within H281DRAFT_05347at 99.670 kb on + strand, within H281DRAFT_05347at 99.670 kb on + strand, within H281DRAFT_05347at 99.671 kb on - strand, within H281DRAFT_05347at 100.836 kb on + strand, within H281DRAFT_05348at 101.379 kb on - strandat 101.379 kb on - strandat 101.379 kb on - strandat 101.473 kb on + strandat 101.473 kb on + strandat 101.494 kb on + strandat 101.665 kb on - strand, within H281DRAFT_05349at 101.768 kb on + strand, within H281DRAFT_05349at 101.827 kb on - strand, within H281DRAFT_05349at 101.832 kb on + strand, within H281DRAFT_05349at 101.832 kb on + strand, within H281DRAFT_05349at 102.052 kb on - strandat 102.162 kb on - strandat 102.173 kb on + strandat 102.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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99,353 + H281DRAFT_05347 0.44 +0.4
99,355 + H281DRAFT_05347 0.44 -0.6
99,355 + H281DRAFT_05347 0.44 +1.5
99,355 + H281DRAFT_05347 0.44 -1.9
99,355 + H281DRAFT_05347 0.44 +0.6
99,356 - H281DRAFT_05347 0.44 +0.7
99,356 - H281DRAFT_05347 0.44 +0.3
99,388 - H281DRAFT_05347 0.46 -0.2
99,427 + H281DRAFT_05347 0.49 +0.1
99,670 + H281DRAFT_05347 0.63 +0.7
99,670 + H281DRAFT_05347 0.63 -1.7
99,671 - H281DRAFT_05347 0.63 -0.1
100,836 + H281DRAFT_05348 0.55 -2.0
101,379 - +0.2
101,379 - -1.1
101,379 - -1.7
101,473 + -1.3
101,473 + +0.5
101,494 + -0.2
101,665 - H281DRAFT_05349 0.33 -0.3
101,768 + H281DRAFT_05349 0.52 +0.1
101,827 - H281DRAFT_05349 0.63 +0.4
101,832 + H281DRAFT_05349 0.64 +0.3
101,832 + H281DRAFT_05349 0.64 -0.0
102,052 - -0.5
102,162 - +0.8
102,173 + +0.9
102,174 - +1.4

Or see this region's nucleotide sequence