Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05315

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05314 and H281DRAFT_05315 are separated by 64 nucleotidesH281DRAFT_05315 and H281DRAFT_05316 are separated by 222 nucleotides H281DRAFT_05314: H281DRAFT_05314 - 2-hydroxy-3-oxopropionate reductase, at 63,741 to 64,634 _05314 H281DRAFT_05315: H281DRAFT_05315 - 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20), at 64,699 to 65,505 _05315 H281DRAFT_05316: H281DRAFT_05316 - NADP-dependent aldehyde dehydrogenase, at 65,728 to 67,335 _05316 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1 2at 63.972 kb on - strand, within H281DRAFT_05314at 64.132 kb on - strand, within H281DRAFT_05314at 64.311 kb on + strand, within H281DRAFT_05314at 64.678 kb on - strandat 65.076 kb on - strand, within H281DRAFT_05315at 65.239 kb on - strand, within H281DRAFT_05315at 65.463 kb on + strandat 65.464 kb on - strandat 65.480 kb on + strandat 65.538 kb on + strandat 65.539 kb on - strandat 65.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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63,972 - H281DRAFT_05314 0.26 +0.5
64,132 - H281DRAFT_05314 0.44 +0.7
64,311 + H281DRAFT_05314 0.64 +2.6
64,678 - -0.1
65,076 - H281DRAFT_05315 0.47 +1.1
65,239 - H281DRAFT_05315 0.67 +1.7
65,463 + -0.4
65,464 - +1.5
65,480 + +0.2
65,538 + -1.9
65,539 - +1.3
65,615 - -1.6

Or see this region's nucleotide sequence