Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04687

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04686 and H281DRAFT_04687 are separated by 237 nucleotidesH281DRAFT_04687 and H281DRAFT_04688 are separated by 345 nucleotides H281DRAFT_04686: H281DRAFT_04686 - nitric oxide dioxygenase, at 91,086 to 92,291 _04686 H281DRAFT_04687: H281DRAFT_04687 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, at 92,529 to 93,602 _04687 H281DRAFT_04688: H281DRAFT_04688 - microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62, at 93,948 to 95,414 _04688 Position (kb) 92 93 94Strain fitness (log2 ratio) -1 0 1 2 3 4at 91.594 kb on - strand, within H281DRAFT_04686at 91.645 kb on - strand, within H281DRAFT_04686at 91.645 kb on - strand, within H281DRAFT_04686at 91.698 kb on + strand, within H281DRAFT_04686at 91.771 kb on + strand, within H281DRAFT_04686at 91.940 kb on + strand, within H281DRAFT_04686at 91.940 kb on + strand, within H281DRAFT_04686at 91.941 kb on - strand, within H281DRAFT_04686at 91.941 kb on - strand, within H281DRAFT_04686at 92.109 kb on + strand, within H281DRAFT_04686at 92.110 kb on - strand, within H281DRAFT_04686at 92.134 kb on + strand, within H281DRAFT_04686at 92.175 kb on + strandat 92.176 kb on - strandat 92.178 kb on + strandat 92.178 kb on + strandat 92.178 kb on + strandat 92.178 kb on + strandat 92.178 kb on + strandat 92.179 kb on - strandat 92.179 kb on - strandat 92.354 kb on + strandat 92.355 kb on - strandat 92.412 kb on + strandat 92.412 kb on + strandat 92.413 kb on - strandat 92.413 kb on - strandat 92.413 kb on - strandat 92.416 kb on + strandat 92.417 kb on - strandat 92.642 kb on - strand, within H281DRAFT_04687at 92.712 kb on - strand, within H281DRAFT_04687at 92.910 kb on - strand, within H281DRAFT_04687at 92.937 kb on + strand, within H281DRAFT_04687at 93.145 kb on + strand, within H281DRAFT_04687at 93.145 kb on + strand, within H281DRAFT_04687at 93.145 kb on + strand, within H281DRAFT_04687at 93.146 kb on - strand, within H281DRAFT_04687at 93.146 kb on - strand, within H281DRAFT_04687at 93.169 kb on + strand, within H281DRAFT_04687at 93.170 kb on - strand, within H281DRAFT_04687at 93.264 kb on - strand, within H281DRAFT_04687at 93.278 kb on + strand, within H281DRAFT_04687at 93.319 kb on + strand, within H281DRAFT_04687at 93.405 kb on - strand, within H281DRAFT_04687at 93.490 kb on + strand, within H281DRAFT_04687at 93.490 kb on + strand, within H281DRAFT_04687at 93.490 kb on + strand, within H281DRAFT_04687at 93.491 kb on - strand, within H281DRAFT_04687at 93.491 kb on - strand, within H281DRAFT_04687at 93.491 kb on - strand, within H281DRAFT_04687at 93.491 kb on - strand, within H281DRAFT_04687at 93.491 kb on - strand, within H281DRAFT_04687at 93.491 kb on - strand, within H281DRAFT_04687at 93.625 kb on + strandat 93.626 kb on - strandat 93.626 kb on - strandat 93.659 kb on - strandat 93.659 kb on - strandat 93.730 kb on + strandat 93.731 kb on - strandat 93.731 kb on - strandat 93.739 kb on + strandat 93.740 kb on - strandat 93.740 kb on - strandat 93.846 kb on + strandat 93.847 kb on - strandat 93.950 kb on - strandat 94.084 kb on + strandat 94.085 kb on - strandat 94.085 kb on - strandat 94.136 kb on - strand, within H281DRAFT_04688at 94.162 kb on + strand, within H281DRAFT_04688at 94.162 kb on + strand, within H281DRAFT_04688at 94.235 kb on - strand, within H281DRAFT_04688at 94.235 kb on - strand, within H281DRAFT_04688at 94.235 kb on - strand, within H281DRAFT_04688at 94.294 kb on + strand, within H281DRAFT_04688at 94.294 kb on + strand, within H281DRAFT_04688at 94.294 kb on + strand, within H281DRAFT_04688at 94.295 kb on - strand, within H281DRAFT_04688at 94.295 kb on - strand, within H281DRAFT_04688at 94.295 kb on - strand, within H281DRAFT_04688at 94.295 kb on - strand, within H281DRAFT_04688at 94.397 kb on + strand, within H281DRAFT_04688at 94.397 kb on + strand, within H281DRAFT_04688at 94.398 kb on - strand, within H281DRAFT_04688at 94.399 kb on + strand, within H281DRAFT_04688at 94.399 kb on + strand, within H281DRAFT_04688at 94.400 kb on - strand, within H281DRAFT_04688at 94.400 kb on - strand, within H281DRAFT_04688at 94.400 kb on - strand, within H281DRAFT_04688

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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91,594 - H281DRAFT_04686 0.42 -1.4
91,645 - H281DRAFT_04686 0.46 -0.0
91,645 - H281DRAFT_04686 0.46 +0.7
91,698 + H281DRAFT_04686 0.51 +0.0
91,771 + H281DRAFT_04686 0.57 +0.9
91,940 + H281DRAFT_04686 0.71 -1.4
91,940 + H281DRAFT_04686 0.71 -0.8
91,941 - H281DRAFT_04686 0.71 -0.2
91,941 - H281DRAFT_04686 0.71 +0.3
92,109 + H281DRAFT_04686 0.85 +0.4
92,110 - H281DRAFT_04686 0.85 +0.2
92,134 + H281DRAFT_04686 0.87 +0.1
92,175 + -0.3
92,176 - +2.5
92,178 + -0.2
92,178 + +1.0
92,178 + -0.0
92,178 + +0.1
92,178 + -0.1
92,179 - -0.2
92,179 - +0.4
92,354 + +0.4
92,355 - +0.4
92,412 + +1.2
92,412 + +1.0
92,413 - -0.2
92,413 - -0.0
92,413 - +0.1
92,416 + -0.8
92,417 - -1.3
92,642 - H281DRAFT_04687 0.11 +0.0
92,712 - H281DRAFT_04687 0.17 +1.3
92,910 - H281DRAFT_04687 0.35 +0.1
92,937 + H281DRAFT_04687 0.38 +1.0
93,145 + H281DRAFT_04687 0.57 +0.6
93,145 + H281DRAFT_04687 0.57 +0.1
93,145 + H281DRAFT_04687 0.57 +1.6
93,146 - H281DRAFT_04687 0.57 -0.2
93,146 - H281DRAFT_04687 0.57 +1.3
93,169 + H281DRAFT_04687 0.60 +0.5
93,170 - H281DRAFT_04687 0.60 +0.9
93,264 - H281DRAFT_04687 0.68 +1.6
93,278 + H281DRAFT_04687 0.70 +1.4
93,319 + H281DRAFT_04687 0.74 +1.4
93,405 - H281DRAFT_04687 0.82 +1.2
93,490 + H281DRAFT_04687 0.89 +0.9
93,490 + H281DRAFT_04687 0.89 +0.5
93,490 + H281DRAFT_04687 0.89 +0.4
93,491 - H281DRAFT_04687 0.90 +0.5
93,491 - H281DRAFT_04687 0.90 +0.5
93,491 - H281DRAFT_04687 0.90 +1.9
93,491 - H281DRAFT_04687 0.90 -0.1
93,491 - H281DRAFT_04687 0.90 +1.0
93,491 - H281DRAFT_04687 0.90 +0.6
93,625 + +0.7
93,626 - +0.3
93,626 - -0.1
93,659 - -1.5
93,659 - +0.0
93,730 + +0.6
93,731 - +0.4
93,731 - +2.0
93,739 + +0.5
93,740 - +0.4
93,740 - +1.9
93,846 + +4.0
93,847 - -1.7
93,950 - -1.3
94,084 + -1.2
94,085 - +0.1
94,085 - +0.8
94,136 - H281DRAFT_04688 0.13 +1.9
94,162 + H281DRAFT_04688 0.15 +0.6
94,162 + H281DRAFT_04688 0.15 -0.7
94,235 - H281DRAFT_04688 0.20 -0.4
94,235 - H281DRAFT_04688 0.20 +2.4
94,235 - H281DRAFT_04688 0.20 +0.1
94,294 + H281DRAFT_04688 0.24 +0.1
94,294 + H281DRAFT_04688 0.24 +0.3
94,294 + H281DRAFT_04688 0.24 -0.5
94,295 - H281DRAFT_04688 0.24 +0.1
94,295 - H281DRAFT_04688 0.24 +0.4
94,295 - H281DRAFT_04688 0.24 +1.0
94,295 - H281DRAFT_04688 0.24 -0.0
94,397 + H281DRAFT_04688 0.31 +0.3
94,397 + H281DRAFT_04688 0.31 -0.1
94,398 - H281DRAFT_04688 0.31 -0.2
94,399 + H281DRAFT_04688 0.31 -1.2
94,399 + H281DRAFT_04688 0.31 +0.1
94,400 - H281DRAFT_04688 0.31 -0.3
94,400 - H281DRAFT_04688 0.31 +0.5
94,400 - H281DRAFT_04688 0.31 -0.3

Or see this region's nucleotide sequence