Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04657

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04655 and H281DRAFT_04656 are separated by 109 nucleotidesH281DRAFT_04656 and H281DRAFT_04657 are separated by 71 nucleotidesH281DRAFT_04657 and H281DRAFT_04658 are separated by 334 nucleotides H281DRAFT_04655: H281DRAFT_04655 - NAD(P) transhydrogenase subunit beta, at 56,338 to 57,792 _04655 H281DRAFT_04656: H281DRAFT_04656 - Predicted transcriptional regulator, at 57,902 to 58,642 _04656 H281DRAFT_04657: H281DRAFT_04657 - hypothetical protein, at 58,714 to 59,097 _04657 H281DRAFT_04658: H281DRAFT_04658 - putative N6-adenine-specific DNA methylase, at 59,432 to 60,721 _04658 Position (kb) 58 59 60Strain fitness (log2 ratio) -2 -1 0 1at 57.718 kb on + strandat 57.718 kb on + strandat 57.771 kb on + strandat 57.771 kb on + strandat 57.771 kb on + strandat 57.772 kb on - strandat 57.772 kb on - strandat 57.790 kb on + strandat 58.047 kb on - strand, within H281DRAFT_04656at 58.476 kb on + strand, within H281DRAFT_04656at 58.477 kb on - strand, within H281DRAFT_04656at 58.603 kb on - strandat 58.632 kb on + strandat 58.687 kb on - strandat 58.715 kb on + strandat 58.779 kb on - strand, within H281DRAFT_04657at 58.779 kb on - strand, within H281DRAFT_04657at 58.920 kb on + strand, within H281DRAFT_04657at 59.024 kb on + strand, within H281DRAFT_04657at 59.024 kb on + strand, within H281DRAFT_04657at 59.185 kb on + strandat 59.186 kb on - strandat 59.187 kb on + strandat 59.188 kb on - strandat 59.188 kb on - strandat 59.247 kb on + strandat 59.345 kb on - strandat 59.373 kb on - strandat 59.396 kb on + strandat 59.428 kb on - strandat 59.922 kb on - strand, within H281DRAFT_04658at 60.006 kb on + strand, within H281DRAFT_04658at 60.007 kb on - strand, within H281DRAFT_04658

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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57,718 + -0.1
57,718 + -1.6
57,771 + -0.3
57,771 + +0.2
57,771 + -0.3
57,772 - +0.3
57,772 - +0.3
57,790 + -0.2
58,047 - H281DRAFT_04656 0.20 -0.7
58,476 + H281DRAFT_04656 0.77 +0.8
58,477 - H281DRAFT_04656 0.78 -0.8
58,603 - -0.6
58,632 + +0.4
58,687 - +0.8
58,715 + +0.2
58,779 - H281DRAFT_04657 0.17 +0.5
58,779 - H281DRAFT_04657 0.17 +0.3
58,920 + H281DRAFT_04657 0.54 +0.4
59,024 + H281DRAFT_04657 0.81 -0.3
59,024 + H281DRAFT_04657 0.81 -0.3
59,185 + +0.5
59,186 - +0.7
59,187 + -0.5
59,188 - +0.2
59,188 - +0.8
59,247 + -1.8
59,345 - -0.5
59,373 - +0.6
59,396 + +0.1
59,428 - -1.3
59,922 - H281DRAFT_04658 0.38 +0.1
60,006 + H281DRAFT_04658 0.44 +0.1
60,007 - H281DRAFT_04658 0.45 +1.2

Or see this region's nucleotide sequence