Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04000 and H281DRAFT_04001 are separated by 69 nucleotides H281DRAFT_04001 and H281DRAFT_04002 are separated by 79 nucleotides H281DRAFT_04002 and H281DRAFT_04003 are separated by 96 nucleotides H281DRAFT_04003 and H281DRAFT_04004 are separated by 95 nucleotides H281DRAFT_04004 and H281DRAFT_04005 are separated by 111 nucleotides H281DRAFT_04005 and H281DRAFT_04006 are separated by 60 nucleotides
H281DRAFT_04000: H281DRAFT_04000 - transcription elongation factor GreB, at 105,097 to 105,717
_04000
H281DRAFT_04001: H281DRAFT_04001 - tRNA_Arg_ACG, at 105,787 to 105,863
_04001
H281DRAFT_04002: H281DRAFT_04002 - tRNA_Arg_ACG, at 105,943 to 106,019
_04002
H281DRAFT_04003: H281DRAFT_04003 - Protein of unknown function (DUF2591), at 106,116 to 106,607
_04003
H281DRAFT_04004: H281DRAFT_04004 - (p)ppGpp synthetase I, SpoT/RelA, at 106,703 to 109,063
_04004
H281DRAFT_04005: H281DRAFT_04005 - DNA-directed RNA polymerase subunit omega, at 109,175 to 109,378
_04005
H281DRAFT_04006: H281DRAFT_04006 - guanylate kinase, at 109,439 to 110,122
_04006
Position (kb)
106
107
108
109
110 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 105.707 kb on + strand at 105.740 kb on - strand at 105.812 kb on + strand, within H281DRAFT_04001 at 105.896 kb on + strand at 105.921 kb on + strand at 105.964 kb on - strand, within H281DRAFT_04002 at 105.969 kb on - strand, within H281DRAFT_04002 at 106.024 kb on + strand at 106.204 kb on - strand, within H281DRAFT_04003 at 106.570 kb on + strand at 106.599 kb on + strand at 106.600 kb on - strand at 106.794 kb on - strand at 106.937 kb on - strand at 107.127 kb on + strand, within H281DRAFT_04004 at 107.127 kb on + strand, within H281DRAFT_04004 at 107.128 kb on - strand, within H281DRAFT_04004 at 107.425 kb on - strand, within H281DRAFT_04004 at 107.778 kb on - strand, within H281DRAFT_04004 at 109.177 kb on - strand at 109.415 kb on + strand at 109.415 kb on + strand at 109.415 kb on + strand at 109.415 kb on + strand at 109.416 kb on - strand at 109.416 kb on - strand at 109.416 kb on - strand at 109.416 kb on - strand at 109.416 kb on - strand at 109.416 kb on - strand at 109.416 kb on - strand at 109.416 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 105,707 + -2.1 105,740 - -0.3 105,812 + H281DRAFT_04001 0.32 +0.0 105,896 + +0.4 105,921 + +0.2 105,964 - H281DRAFT_04002 0.27 -2.2 105,969 - H281DRAFT_04002 0.34 +0.4 106,024 + +0.6 106,204 - H281DRAFT_04003 0.18 -0.6 106,570 + -1.2 106,599 + +0.8 106,600 - -1.3 106,794 - +1.6 106,937 - +1.6 107,127 + H281DRAFT_04004 0.18 -1.3 107,127 + H281DRAFT_04004 0.18 +1.4 107,128 - H281DRAFT_04004 0.18 +0.8 107,425 - H281DRAFT_04004 0.31 +0.9 107,778 - H281DRAFT_04004 0.46 +1.7 109,177 - +0.4 109,415 + +1.8 109,415 + +3.4 109,415 + +2.2 109,415 + +2.3 109,416 - -0.4 109,416 - -0.1 109,416 - -0.9 109,416 - +0.1 109,416 - +0.6 109,416 - -0.8 109,416 - -0.1 109,416 - -0.1
Or see this region's nucleotide sequence